Sequence details NCBI ID: XM_004848544.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Hcn1
Gene Name hyperpolarization activated cyclic nucleotide-gated potassium channel 1
Entrez Gene ID 101705902

Database interlinks

Part of NW_004624759.1 (Scaffold)

For more information consult the page for NW_004624759.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

HCN1 ENSCPOG00000014131 (Guinea pig)

Gene Details

Uncharacterized protein

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000012730, Guinea pig)

Protein Percentage 97.01%
CDS Percentage 93.58%
Ka/Ks Ratio 0.07355 (Ka = 0.0167, Ks = 0.2265)

HCN1 ENSG00000164588 (Human)

Gene Details

hyperpolarization activated cyclic nucleotide-gated potassium channel 1

External Links

Gene Match (Ensembl Protein ID: ENSP00000307342, Human)

Protein Percentage 96.11%
CDS Percentage 91.57%
Ka/Ks Ratio 0.05042 (Ka = 0.0182, Ks = 0.3618)

Hcn1 ENSMUSG00000021730 (Mouse)

Gene Details

hyperpolarization-activated, cyclic nucleotide-gated K+ 1

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000006991, Mouse)

Protein Percentage 94.61%
CDS Percentage 87.84%
Ka/Ks Ratio 0.04617 (Ka = 0.027, Ks = 0.5851)

Hcn1 ENSRNOG00000011522 (Rat)

Gene Details

hyperpolarization-activated cyclic nucleotide-gated potassium channel 1 (Hcn1), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000016142, Rat)

Protein Percentage 94.27%
CDS Percentage 88.46%
Ka/Ks Ratio 0.05526 (Ka = 0.0291, Ks = 0.5268)

Genome Location

Sequence Coding sequence

Length: 2625 bp    Location: 9636380..10044985   Strand: +
Raw sequence   
>XM_004848544.1
ATGGAAGCAGGCGGCAAGCCCAACTCCTCGTCCAGCTGCCGCGACGATGGCAACAGCGTCTTCCCCGCCAAGGCGGTCGTCGCGGGGCCGGGCGCGGCCGAGAAGCAGCTGGGGACCCCGCTGGGGGGCGGCGCGGCGGGCGCCAAGGAGCACGGCAACTCCGTGTGCTTCAAGGTGGACGGCGGCGGCGGCGGCGACGAGGCGGCGGGCGGGGAGGACGGCGAGGGGCCCCGGCGGCAGTACGGCTTCATGAAACGCCAGTTCACCTCCATGCTCCAGCCCGGGGTCAACAAATTCTCCCTCCGCATGTTCGGCAGCCAGAAGGCGGTGGAGAAGGAGCAGGAAAGGGTTAAAACTGCAGGCTTCTGGATCATCCACCCCTACAGCGATTTCAGGTTTTATTGGGACTTAATAATGCTGATAATGATGGTTGGAAATCTGGTCATCATACCAGTTGGAATCACATTCTTTACAGAGCAAACAACGACACCATGGATTATTTTCAATGTGGCATCAGATACCGTTTTCCTATTGGACCTGATCATGAATTTTAGGACTGGGACTGTCAATGAAGACAGTTCTGAAATCATCCTGGACCCTAAAGTGATCAAGATGAATTATTTAAAAAGCTGGTTTGTGGTTGACTTCATCTCATCAATTCCAGTGGATTATATCTTTCTCATTGTAGAAAAAGGAATGGATTCAGAAGTTTACAAGACAGCCAGGGCACTTCGGATTGTGAGGTTTACAAAAATACTCAGTCTCTTGCGGTTACTACGACTTTCAAGGTTAATTAGATATATACATCAGTGGGAAGAGATATTCCACATGACCTATGATCTCGCCAGTGCGGTCGTGAGAATTTTTAATCTCATCGGCATGATGCTGCTCCTATGCCACTGGGATGGATGTCTGCAGTTCTTAGTTCCTCTCCTGCAGGATTTCCCACAAGACTGTTGGGTTTCTCTAAACAAGATGGTTAATGTTTCTTGGGGACAACAGTATTCATATGCACTCTTCAAAGCAATGAGTCACATGCTGTGCATTGGGTATGGAGCCCAAGCCCCAGTCAGCATGTCTGACCTCTGGATTACCATGTTGAGCATGATTGTCGGTGCTACCTGCTATGCCATGTTTGTCGGCCATGCCACTGCTTTAATCCAGTCATTGGATTCTTCCAGGCGGCAATACCAAGAGAAGTATAAGCAAGTGGAGCAATACATGTCCTTCCATAAGTTACCAGCTGACATGCGTCAGAAGATACATGATTATTATGAACACAGATACCAAGGCAAAATCTTCGATGAGGAAAATATTCTCAATGAACTTAATGATCCACTGAGAGAGGAGATAGTCAACTTCAACTGTCGAAAACTGGTGGCTACAATGCCTCTTTTTGCTAACGCGGATCCTAATTTTGTGACGGCCATGCTGAGCAAGTTGAGATTTGAGGTATTTCAACCTGGAGACTATATCATTCGAGAAGGAGCTGTGGGGAAAAAAATGTATTTCATTCAACATGGTGTTGCTGGTGTCATCACCAAGTCCAGTAAAGAAATGAAGCTGACAGATGGCTCTTACTTTGGAGAAATTTGCCTGCTGACCAAGGGTCGCCGCACTGCCAGTGTTCGAGCTGATACATATTGTCGTCTTTATTCCCTTTCTGTGGACAATTTCAATGAGGTCCTGGAGGAATATCCAATGATGAGGAGAGCCTTTGAGACAGTTGCCATCGACCGACTAGATCGGATAGGAAAGAAAAACTCCATTCTTTTACAGAAGTTCCAGAAGGATCTGAACACCGGTGTTTTCAATAATCAGGAGAATGAGATCCTGAAGCAGATCGTGAAACATGACAGGGAGATGGTGCAGGCAATCGCTCCAATCAATTACCCTCAAATGACAACCCTGAATTCCACATCTTCCACCGCCACTCCAACCTCGCGCATGAGGACACAGTCCCCGCCAGTGTACACAGCCACCAATCTGTCTCATAGCAACCTGCATTCCCCCAGTCCCAGCACACAGACACCCCAGCCGTCTGCCATCCTGTCGCCCTGCTCCTACACCACGGCGGTCTGCAGCCCTCCAGTACAGAGCCCACTGGCCACGCGAACTTTCCACTACGCCTCCCCCACCGCCTCGCAGCTGTCCCTCATGCACCAACAGGTGCCGCAGTCCCAGCCACCCCAGACTCAGCCGCAGCCGCAACAGCCTCAGACACCGGGCAGCTCCACACCGAAGAACGAAGTACACAAGAGCACGCAGGCGCTGCACAACACCAACCTGACCCGGGAAGTCAGGCCCCTCTCGGCTTCGCAGCCCTCGCTGCCCCACGAGGTGTCCACGCTGATCTCCAGACCTCATCCCACTGTGGGCGAGTCTCTGGCCTCCATCCCTCAACCCGTGACGGCTGTCCATGGCACGGGGCTTCAGGCCGGGGGCAGGAGCACCGTCTCGCAGAGAGTCACCCTCTTCAGACAGATGTCATCTGGAGCCATCCCACCCAACCGGGGAGTCCCGCCCGCACCCCCTCCACCAGCACCCGCTCTGCAGAGAGAGGCTTCCCCAGTCTTAAACACAGACTCAGATGCAGAAAAGCCACGATTTGCTTCAAATTTATGA

Related Sequences

XP_004848601.1 Protein

Hcn1 PREDICTED: potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 1-like [Heterocephalus glaber]

Length: 874 aa      View alignments
>XP_004848601.1
MEAGGKPNSSSSCRDDGNSVFPAKAVVAGPGAAEKQLGTPLGGGAAGAKEHGNSVCFKVDGGGGGDEAAGGEDGEGPRRQYGFMKRQFTSMLQPGVNKFSLRMFGSQKAVEKEQERVKTAGFWIIHPYSDFRFYWDLIMLIMMVGNLVIIPVGITFFTEQTTTPWIIFNVASDTVFLLDLIMNFRTGTVNEDSSEIILDPKVIKMNYLKSWFVVDFISSIPVDYIFLIVEKGMDSEVYKTARALRIVRFTKILSLLRLLRLSRLIRYIHQWEEIFHMTYDLASAVVRIFNLIGMMLLLCHWDGCLQFLVPLLQDFPQDCWVSLNKMVNVSWGQQYSYALFKAMSHMLCIGYGAQAPVSMSDLWITMLSMIVGATCYAMFVGHATALIQSLDSSRRQYQEKYKQVEQYMSFHKLPADMRQKIHDYYEHRYQGKIFDEENILNELNDPLREEIVNFNCRKLVATMPLFANADPNFVTAMLSKLRFEVFQPGDYIIREGAVGKKMYFIQHGVAGVITKSSKEMKLTDGSYFGEICLLTKGRRTASVRADTYCRLYSLSVDNFNEVLEEYPMMRRAFETVAIDRLDRIGKKNSILLQKFQKDLNTGVFNNQENEILKQIVKHDREMVQAIAPINYPQMTTLNSTSSTATPTSRMRTQSPPVYTATNLSHSNLHSPSPSTQTPQPSAILSPCSYTTAVCSPPVQSPLATRTFHYASPTASQLSLMHQQVPQSQPPQTQPQPQQPQTPGSSTPKNEVHKSTQALHNTNLTREVRPLSASQPSLPHEVSTLISRPHPTVGESLASIPQPVTAVHGTGLQAGGRSTVSQRVTLFRQMSSGAIPPNRGVPPAPPPPAPALQREASPVLNTDSDAEKPRFASNL