Details from NCBI annotation

Gene Symbol Pdlim2
Gene Name PDZ and LIM domain 2 (mystique), transcript variant X7
Entrez Gene ID 101721824

Database interlinks

Part of NW_004624758.1 (Scaffold)

For more information consult the page for NW_004624758.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

PDLIM2 ENSCPOG00000020871 (Guinea pig)

Gene Details

PDZ and LIM domain 2 (mystique)

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000018094, Guinea pig)

Protein Percentage 81.51%
CDS Percentage 84.78%
Ka/Ks Ratio 0.23646 (Ka = 0.1144, Ks = 0.484)

PDLIM2 ENSG00000120913 (Human)

Gene Details

PDZ and LIM domain 2 (mystique)

External Links

Gene Match (Ensembl Protein ID: ENSP00000312634, Human)

Protein Percentage 84.86%
CDS Percentage 83.43%
Ka/Ks Ratio 0.09741 (Ka = 0.084, Ks = 0.8619)

Pdlim2 ENSMUSG00000022090 (Mouse)

Gene Details

PDZ and LIM domain 2

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000116200, Mouse)

Protein Percentage 81.45%
CDS Percentage 81.06%
Ka/Ks Ratio 0.11198 (Ka = 0.1047, Ks = 0.9351)

Pdlim2 ENSRNOG00000008543 (Rat)

Gene Details

PDZ and LIM domain 2 (Pdlim2), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000011663, Rat)

Protein Percentage 80.58%
CDS Percentage 79.61%
Ka/Ks Ratio 0.11378 (Ka = 0.1173, Ks = 1.0308)

Genome Location

Sequence Coding sequence

Length: 1074 bp    Location: 18085903..18098829   Strand: +
>XM_004848321.1
ATGGCGCTCACTGTGGATGTGGTGGGGCCGGCGCCCTGGGGCTTCCGCATCACCGGGGGCAGGGATTTCCACACGCCCATCATGGTGACCAAGGTAAATGCCAGGGGCAAGGCTGAGGCCGCTGACCTCCGGCCCGGGGACGTCATTGTGGCCATCAATGGGGAGAGTGCAGCGGGGATGCTTCATGCTGAGGCCCAGAGCAAGATCCGCCAGAGCACATCACCCCTGCGACTGCAGCTGGACAGGTCCCGGGCTGCCTCTCCTGGGCAGAGCAATGGCGACGGCTCCTTGGAAGTGCTGGCCACTCGCTTCCAGGGCTCCCTGAGGACACGCCCCGACAGCCAGTCCTCCCTGTGGTCCTCCTACTCCAGCCCCACCTCCCTCAGCCCCCGGCCGTGCAGCCCCTTCACCCCGCCCCCCAGCAGCCCACTGGGGCTAGTGGGAGAGGCACCGATTGGCCACAGCTTCCAGAGCCTGACCCACTCGGCTGCCTTCCCTGGAGCTGCTGCGGACCGCTTGTCCTGCCTGTCCCCCGGGAGCCGCCCCGCAGGACGCCAGGCGGGCCTGGGCCGCGCGGGCGACTCAGCTGTGCGGGTGCTTCCCCCACGGTGCTCCAGCCCTAGGTTCAGCAGCGCGGACTCAGAAGCCGGCAGCCTCGTGCTGGAAGAGGACTCGGAGGTGTTCAAGATGCTGCAGGAAAACCGCGAGGGCCGGGTGGCCCCACGCCAGTCTAGCTCCTTTCGGCTCCTACAGGAAGCGCTGGAGGCCGAGGAGAGAGGTGGCACGCCGGCCTTCGTGCCCAGCTCGCTGAGCCCCCAGTCCTCCCTGCCCACGTCCAGGGCCCTGGCCACCCCGCCTAAGCTCCACACCTGCGAGAAGTGCAACACCAGCATCGCGAACCAGGCTGTGCGCATCCAGGAGGGCCGGTACCGCCACCCTGGCTGCTACACCTGTGCAGACTGTGGGCTGAACCTGAAGATGCGTGGCCACTTCTGGGTGGGCGAAGAGCTGTACTGTGAGAAGCACGCCCGCCAGCGCTACTCGGCTCCCTCCTCCCTCAGCTCCCAGGCCTGA

Related Sequences

XP_004848378.1 Protein

Pdlim2 PREDICTED: PDZ and LIM domain protein 2 isoform X7 [Heterocephalus glaber]

Length: 357 aa      View alignments
>XP_004848378.1
MALTVDVVGPAPWGFRITGGRDFHTPIMVTKVNARGKAEAADLRPGDVIVAINGESAAGMLHAEAQSKIRQSTSPLRLQLDRSRAASPGQSNGDGSLEVLATRFQGSLRTRPDSQSSLWSSYSSPTSLSPRPCSPFTPPPSSPLGLVGEAPIGHSFQSLTHSAAFPGAAADRLSCLSPGSRPAGRQAGLGRAGDSAVRVLPPRCSSPRFSSADSEAGSLVLEEDSEVFKMLQENREGRVAPRQSSSFRLLQEALEAEERGGTPAFVPSSLSPQSSLPTSRALATPPKLHTCEKCNTSIANQAVRIQEGRYRHPGCYTCADCGLNLKMRGHFWVGEELYCEKHARQRYSAPSSLSSQA