Details from NCBI annotation

Gene Symbol Slc44a1
Gene Name solute carrier family 44, member 1, transcript variant X4
Entrez Gene ID 101702879

Database interlinks

Part of NW_004624758.1 (Scaffold)

For more information consult the page for NW_004624758.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

SLC44A1 ENSCPOG00000015289 (Guinea pig)

Gene Details

solute carrier family 44 (choline transporter), member 1

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000013779, Guinea pig)

Protein Percentage 95.77%
CDS Percentage 94.57%
Ka/Ks Ratio 0.15823 (Ka = 0.0237, Ks = 0.1497)

SLC44A1 ENSG00000070214 (Human)

Gene Details

solute carrier family 44 (choline transporter), member 1

External Links

Gene Match (Ensembl Protein ID: ENSP00000363852, Human)

Protein Percentage 96.32%
CDS Percentage 94.13%
Ka/Ks Ratio 0.12252 (Ka = 0.0216, Ks = 0.176)

Slc44a1 ENSMUSG00000028412 (Mouse)

Gene Details

solute carrier family 44, member 1

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000099975, Mouse)

Protein Percentage 96.32%
CDS Percentage 91.17%
Ka/Ks Ratio 0.0553 (Ka = 0.0186, Ks = 0.337)

Slc44a1 ENSRNOG00000017846 (Rat)

Gene Details

solute carrier family 44 (choline transporter), member 1 (Slc44a1), transcript variant 2, mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000024229, Rat)

Protein Percentage 94.47%
CDS Percentage 88.84%
Ka/Ks Ratio 0.07204 (Ka = 0.0312, Ks = 0.4336)

Genome Location

Sequence Coding sequence

Length: 1962 bp    Location: 6151320..5963299   Strand: -
>XM_004848188.1
ATGGGCTGCTGCAGCTCCGCCTCCGCCGCGCAGAGCTCCAAACGAGAATGGAAGCCACTGGAAGACCGTAGCTGCACAGACATACCATGGCTACTGCTCTTTGTCCTCTTCTGCATTGGAATGGGATTTATTTGTGGCTTTTCAGTAGCAACAGGTGCAGCAGCGAGACTAGTGTCAGGATACGACAGCTATGGAAATATCTGTGGGCAGAAAAATGCAAAGTTGGAAGCAATACCAAACAGTGGCATGGACCACACCCACCAGAAGTATGTATTCTTTTTGGATCCATGCAAACTGGACTTGATTAACCGGAAGATCAAGTCTGTAGCACTATGTGTAGCAGCATGTCCAAGACAAGAATTGAAAACCTTGAGTGATGTGCAGAAGTTTGCAGAGATGAATGGCTCAGCACTATGTAGCTACAACCTAAAGCCTTCTGAATATACTATATCTCTTAAATCTTCTGATCTTTGCCCCAAACTACCAGTTCCAGCGAGTGCACCTATTCCATTCTTCCATCGCTGTGCTCCTGTGAACATTTCCTGCTATGCCAAGTTTGCAGAGGCCCTGATCACCTTTGTCAGTGACAATAGTGTCTTACACAGGCTGATTAGTGGAGTAATGACCAGCAAAGAAATTATATTGGGACTTTGCTTGTTATCACTAGTTCTATCCATGATTTTGATGGTGATAATCAGGTATATATCAAGAATACTTGTGTGGATCTTAACAATTCTGGTCATACTGGGTTCACTTGGTGGCACAGGTGTACTATGGTGGCTGTATGCAAAGCAAAGAAGGTCACCAAAAGAAAAAGTTCTTCCTGAACAGCTTCAGATAGCTGAAGACAATCTTCGGGCCCTCCTCATCTATGCCATTTCAGCTACAGTGTTCACAGTTATCTTGTTCCTGATAATGCTGGTTATGCGCAAACGTGTTGCTCTCACAATCGCCTTGTTTCATGTGGCCGGCAAGGTCTTCATTCACCTGCCACTGTTAGTCTTCCAACCGTTTTGGACCTTCTTTGCTCTTGTCTTGTTTTGGGCATACTGGATCATGACACTTCTTTTTCTTGGCACTACTGGCAGTGCTGTTCAGAATGACGAAGGCTTTGTGGAGTTTAGAATTTCTGGTCCTCTACAGTACATGTGGTGGTACCATGTGGTTGGCCTAATCTGGATCAGTGAATTTATTCTAGCATGTCAGCAGATGACTGTGGCCGGAGCTGTGGTAACGTACTACTTCACTAGGGATAAAAGGAATTTGCCATTTACACCCATTTTGGCATCAGTGAATCGCCTTATTCGTTATCACCTTGGTACTGTAGCAAAAGGATCTTTTATTATCACATTAGTAAAAATTCCACGAATGATCCTTATGTACATTCACAGTCAACTCAAAGGGAAGGAAAATGCTTGTGCACGATGTGTGCTGAAATCATGTATTTGTTGCCTTTGGTGTCTTGAAAAGTGCCTAAATTATTTAAATCAGAATGCATACACAGCCACAGCTATCAACAGCACCAACTTCTGCACTTCAGCAAAGGATGCCTTTGTCATTCTGGTGGAGAATGCTTTGCGCGTGGCTGCCATAAACACAGTGGGAGATTTCATGTTATTCCTAGGCAAGGTGCTGATAGTCTGCAGCACAGGTTTGGCTGGGATTATGCTGCTCAACTACCAGCAGGATTACACAGTATGGGTGCTGCCTCTGATCATCGTCTGCCTCTTTGCTTTCCTAGTCGCTCATTGCTTCCTGTCCATTTACGAAATGGTAGTGGATGTATTATTCTTGTGTTTTGCCATTGATACAAAGTACAATGATGGGAGCCCTGGCAGAGAGTTCTATATGGATAAAGTGCTAATGGAATTTGTGGAAAACAGTAGGAAAGCAATGAAAGAAGCTGGTAAGGGAGGCGTTGCTGATGCCAGAGAGCTAAAGCCGATGCTGAGGAAAAGGTGA

Related Sequences

XP_004848245.1 Protein

Slc44a1 PREDICTED: choline transporter-like protein 1 isoform X4 [Heterocephalus glaber]

Length: 653 aa      View alignments
>XP_004848245.1
MGCCSSASAAQSSKREWKPLEDRSCTDIPWLLLFVLFCIGMGFICGFSVATGAAARLVSGYDSYGNICGQKNAKLEAIPNSGMDHTHQKYVFFLDPCKLDLINRKIKSVALCVAACPRQELKTLSDVQKFAEMNGSALCSYNLKPSEYTISLKSSDLCPKLPVPASAPIPFFHRCAPVNISCYAKFAEALITFVSDNSVLHRLISGVMTSKEIILGLCLLSLVLSMILMVIIRYISRILVWILTILVILGSLGGTGVLWWLYAKQRRSPKEKVLPEQLQIAEDNLRALLIYAISATVFTVILFLIMLVMRKRVALTIALFHVAGKVFIHLPLLVFQPFWTFFALVLFWAYWIMTLLFLGTTGSAVQNDEGFVEFRISGPLQYMWWYHVVGLIWISEFILACQQMTVAGAVVTYYFTRDKRNLPFTPILASVNRLIRYHLGTVAKGSFIITLVKIPRMILMYIHSQLKGKENACARCVLKSCICCLWCLEKCLNYLNQNAYTATAINSTNFCTSAKDAFVILVENALRVAAINTVGDFMLFLGKVLIVCSTGLAGIMLLNYQQDYTVWVLPLIIVCLFAFLVAHCFLSIYEMVVDVLFLCFAIDTKYNDGSPGREFYMDKVLMEFVENSRKAMKEAGKGGVADARELKPMLRKR