Sequence details NCBI ID: XM_004847865.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Kdm1b
Gene Name lysine (K)-specific demethylase 1B
Entrez Gene ID 101711296

Database interlinks

Part of NW_004624756.1 (Scaffold)

For more information consult the page for NW_004624756.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

KDM1B ENSCPOG00000005298 (Guinea pig)

Gene Details

lysine (K)-specific demethylase 1B

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000004766, Guinea pig)

Protein Percentage 93.38%
CDS Percentage 91.46%
Ka/Ks Ratio 0.1721 (Ka = 0.0434, Ks = 0.2525)

KDM1B ENSG00000165097 (Human)

Gene Details

lysine (K)-specific demethylase 1B

External Links

Gene Match (Ensembl Protein ID: ENSP00000297792, Human)

Protein Percentage 90.8%
CDS Percentage 87.17%
Ka/Ks Ratio 0.10926 (Ka = 0.054, Ks = 0.4939)

Kdm1b ENSMUSG00000038080 (Mouse)

Gene Details

lysine (K)-specific demethylase 1B

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000038373, Mouse)

Protein Percentage 88.48%
CDS Percentage 85.41%
Ka/Ks Ratio 0.12279 (Ka = 0.0679, Ks = 0.5527)

Kdm1b ENSRNOG00000016519 (Rat)

Gene Details

lysine (K)-specific demethylase 1B (Kdm1b), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000022244, Rat)

Protein Percentage 88.7%
CDS Percentage 85.05%
Ka/Ks Ratio 0.11823 (Ka = 0.068, Ks = 0.5753)

Genome Location

Sequence Coding sequence

Length: 2562 bp    Location: 8506866..8447780   Strand: -
Raw sequence   
>XM_004847865.1
ATGGCAGCCCCTCGGGGAAGGTCAAAGAAAAGAACTGCGTTTGATCTAACTCCAGATAGCCTTCCTTTGAGGAGCTCCGGTAGACAGGCAAAGAAGAAAGTAACAGAGACGATAGAGGAGGATGAAGATGGTGTGTCTGAGAAGAAATACCGCAAATGTGAAAAGGCAGGCTGTACAGCAGCGTGTCCTGTGTGCTTCGCAAGTGCTTCAGAAAGATGTGCCAAAAATGGTTACACATCCCGATGGTATCACCTTTCCTGCGGGGAACATTTCTGCAACGAGTGTTTCGACCATTACTACAGGAGCCATAAAGATGGATATGACAAATATACTACATGGAAAAAAATTTGGACCAGCAACGGCAAAACAGAACCCAGCCCCAAAGCATTCATGGCCGACCAGCAGCTCCCTTACTGGGTGCAGTGTACAAAACCCGAGTGTAGGAAATGGAGGCAGCTTACCAAGGAAATCCAGCTTACTCCACAGATAGCAAAGACTTACCGGTGTGGTATGAAACCAAATACTATGAAGCCCGAGAGCTCAGACCATTGTTCCCTGCCCGAGGACCTGAGAGTGTCAGAAGTTTCCAACCACTGGTGGTACTCCATGCTCATCCTGCCTCCTTTGCTGAAAGACAGTGTGGCAGCGCCTCTGCTCTCCGCCTACTACCCTGACTGCGTGGGCATGAGCCCCTCCTGTACCAGCACAAACCGCGCCGCCGCCTCTGCCACCACAGCCACCACCGGTGATGCCAGCCCGGGGAGGCTGGAGCCCTCCAAGGTGGCCCCTTCTGTGCTTGTTCCAGGCATGAATCGGTACTTCCAGCCTTTCTACCAGCCCAATGAGTGTGGCAAGGCCCTGTGTGTGCGGCCCGATGTGATGGAGCTGGATGAGCTCTATGAGTTTCCTGAGTACTCCCGAGACCCCACCATGTACTTGGCTCTGCGAAACCTCATCCTCGCCCTGTGGTATACGAATTGCAAAGAAGCTCTTACTCCTCAGAAATGCATTCCTCACATCATCGTCCGGGGTCTTGTGCGCATTCGGTGTGTTCAGGAAGTGGAGAGGATACTTTATTTTATGACGAGGAAAGGCCTCATCAACACAGGAGTTCTTACCGTGGGAGCCGACCATTATCTTCTTCCCAAAGACTATCACAATAAATCAGTCATCATTGTTGGGGCTGGTCCAGCAGGGTTAGCTGCTGCTAGGCAACTGCATAACTTTGGAATTAAGGTGACTGTCCTGGAAGCCAAAGACAGAATCGGAGGCCGAGTGTGGGATGATAAATCTTTTAAAGGTGTCACGGTGGGAAGAGGACCCCAGATTGTCAATGGCTGTGTTAATAACCCAGTAGCACTAATGTGTGAGCAACTTGGCATCAGCATGCATAAATTTGGAGAAAGATGTGACTTAATTCAGGAAGGTGGAAGAATAACTGACCCCACCATTGACAAGCGCATGGATTTTCATTTTAATGCTCTCTTGGATGTTGTCTCTGAGTGGAGGAAGGATAAGACTCAGCTCCAAGATGTCCCTTTAGGAGAAAAGATAGAGGAGATCTACAAAGCTTTCATTAAGGAATCCGGCATCCAGTTCAGCGAGCTGGAGGGGCAGGTGCTCCAGTTCCATCTCAGTAACCTGGAATACGCCTGTGGCAGCAACCTCCACCAGGTTTCGGCTCGCTCCTGGGATCACAATGAATTCTTCGCTCAGTTTGCTGGTGACCACACTCTCCTGACTCCTGGGTACTCTGTAATCATTGAGAAACTGGCCGAAGGGCTTGACATTCGGCTCCAGTCTCCGGTGAGCATTGGACACAGGGTCTCGGTTCTTGAGGAGCAGGGACAGAAGAGGCACCAGGATCCAGCTGTCAGCCACAGGGAGTCAAGAAGAGGCCAGGAGGCGCCTTGTTGGCTGGTGGAGGTGGCTCTAGGTGGCGAGATTCAGGAGCTGGTAGCAGCAGTATTAGTTGCTGTTCCACTGGCCATACTACAGAAAGGTGTCATTCAGTTTAATCCACCACTGTCAGAGAAGAAGATGAAAGCTATCAACAGCTTGGGCGCTGGCATCATCGAGAAGATTGCCTTGCAATTTCCGTACAGATTTTGGGACAGCAAAGTTCAAGGAGCTGACTTTTTTGGTCATGTTCCTCCCAGTGCCAGCCAGCGCGGGCTCTTTGCTGTATACTATGACATGGATCCCCAGCAGAGCGTGTTGATGTCGGTGATTGCTGGGGAGGCAGTGGCGTCAGTTCGGACCCTGGATGACAAGCAGGTGCTGCAGCAGTGCATGGCCACCCTGCGGGAGCTGTTCAAGGAGCAGGAGGTCCCAGATCCCTCGAAGTATTTTGTCACTCGATGGAGCACAGAACCATGGATCCAGATGGCATACAGTTTTGTGAAGACATTTGGGAGCGGAGAGGCCTATGATATCATTGCTGAAGAAATACAAGGAACTGTCTTTTTTGCTGGCGAGGCAACAAACAGGCATTTTCCACAAACTGTTACAGGAGCTTATTTGAGTGGTGTTCGAGAAGCAAGCAAGATCGCAGCCTTCTGA

Related Sequences

XP_004847922.1 Protein

Kdm1b PREDICTED: lysine-specific histone demethylase 1B [Heterocephalus glaber]

Length: 853 aa      View alignments
>XP_004847922.1
MAAPRGRSKKRTAFDLTPDSLPLRSSGRQAKKKVTETIEEDEDGVSEKKYRKCEKAGCTAACPVCFASASERCAKNGYTSRWYHLSCGEHFCNECFDHYYRSHKDGYDKYTTWKKIWTSNGKTEPSPKAFMADQQLPYWVQCTKPECRKWRQLTKEIQLTPQIAKTYRCGMKPNTMKPESSDHCSLPEDLRVSEVSNHWWYSMLILPPLLKDSVAAPLLSAYYPDCVGMSPSCTSTNRAAASATTATTGDASPGRLEPSKVAPSVLVPGMNRYFQPFYQPNECGKALCVRPDVMELDELYEFPEYSRDPTMYLALRNLILALWYTNCKEALTPQKCIPHIIVRGLVRIRCVQEVERILYFMTRKGLINTGVLTVGADHYLLPKDYHNKSVIIVGAGPAGLAAARQLHNFGIKVTVLEAKDRIGGRVWDDKSFKGVTVGRGPQIVNGCVNNPVALMCEQLGISMHKFGERCDLIQEGGRITDPTIDKRMDFHFNALLDVVSEWRKDKTQLQDVPLGEKIEEIYKAFIKESGIQFSELEGQVLQFHLSNLEYACGSNLHQVSARSWDHNEFFAQFAGDHTLLTPGYSVIIEKLAEGLDIRLQSPVSIGHRVSVLEEQGQKRHQDPAVSHRESRRGQEAPCWLVEVALGGEIQELVAAVLVAVPLAILQKGVIQFNPPLSEKKMKAINSLGAGIIEKIALQFPYRFWDSKVQGADFFGHVPPSASQRGLFAVYYDMDPQQSVLMSVIAGEAVASVRTLDDKQVLQQCMATLRELFKEQEVPDPSKYFVTRWSTEPWIQMAYSFVKTFGSGEAYDIIAEEIQGTVFFAGEATNRHFPQTVTGAYLSGVREASKIAAF