Sequence details NCBI ID: XM_004847828.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Pgbd1
Gene Name piggyBac transposable element derived 1, transcript variant X1
Entrez Gene ID 101716946

Database interlinks

Part of NW_004624756.1 (Scaffold)

For more information consult the page for NW_004624756.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

Pgbd1 ENSMUSG00000055313 (Mouse)

Gene Details

piggyBac transposable element derived 1

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000097307, Mouse)

Protein Percentage 18.7%
CDS Percentage 35.23%
Ka/Ks Ratio 0.14701 (Ka = 1.3595, Ks = 9.2479)

Genome Location

Sequence Coding sequence

Length: 741 bp    Location: 24610809..24593791   Strand: -
Raw sequence   
>XM_004847828.1
ATGTATGAAGGTTTGCCGGGCTCCATTTCTGAAAATGAACACAGTATCCTGAAAGTGAAGATAGAAGACACCACCTGCGAGCAGGCGTATGGCTCACAGGAGCAGAGCTCCCGCACTCAGGAACTCTGCCGACTGCAGTTCCGGCAGTTCTGCTACCAACAGGCTCCTGGGCCCCGGGAGGCTTTGGCTCAACTCCGGGAGCTCTGCCGTCAGTGGTTGCGGCCAGAAATGCACAGCAAGGAGCAGATCCTGGAGCTGCTGGTGCTGGAGCAGTTCCTGGCCGTCCTGCCCGGGGAGCTGCAGGCCTGGGTGCAGATGTATCCTCTGCAGAGTGGGGAGGAGGCCGTGAGAGTGCTGGAGAATCTAGCAGCAGGACGTGGAGACACAGGACAGCAGGCCTCTTTCTACATTCAGGAACAAGATATGCACCTAGTGGTGACAGACTATCAAGGAGCCTCTTTGGAGAGTCACAGCCTCCAGCTCCTTCCCAGGGTAACCACCCTGCCAAGCGAACCTCCACAGCTCCCCCAAGAAGTGAGTGGTGAGTGCCACAGGATGTCGGTGAAGACTGAGGAAGAGCCAGCCCAGGCTTCTGCACTGGTAGAGTGGCCACGTCTGAGTCTGGCTCCAAGGAACCTCTGTGGGAACTCGGCTCAGGAGACGGCTACAGGCCTGATGAAGCAAAACACCTGTGAAGAAATAGGACCAGGTGTCAAGACCTCAGAAGTACCCAGCAGGTGA

Related Sequences

XP_004847885.1 Protein

Pgbd1 PREDICTED: piggyBac transposable element-derived protein 1-like isoform X1 [Heterocephalus glaber]

Length: 246 aa      
>XP_004847885.1
MYEGLPGSISENEHSILKVKIEDTTCEQAYGSQEQSSRTQELCRLQFRQFCYQQAPGPREALAQLRELCRQWLRPEMHSKEQILELLVLEQFLAVLPGELQAWVQMYPLQSGEEAVRVLENLAAGRGDTGQQASFYIQEQDMHLVVTDYQGASLESHSLQLLPRVTTLPSEPPQLPQEVSGECHRMSVKTEEEPAQASALVEWPRLSLAPRNLCGNSAQETATGLMKQNTCEEIGPGVKTSEVPSR