Sequence details NCBI ID: XM_004847758.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Prpf4b
Gene Name PRP4 pre-mRNA processing factor 4 homolog B (yeast), transcript variant X1
Entrez Gene ID 101722994

Database interlinks

Part of NW_004624756.1 (Scaffold)

For more information consult the page for NW_004624756.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

PRPF4B ENSCPOG00000004775 (Guinea pig)

Gene Details

pre-mRNA processing factor 4B

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000004298, Guinea pig)

Protein Percentage 96.23%
CDS Percentage 90.87%
Ka/Ks Ratio 0.04855 (Ka = 0.0208, Ks = 0.4275)

PRPF4B ENSG00000112739 (Human)

Gene Details

pre-mRNA processing factor 4B

External Links

Gene Match (Ensembl Protein ID: ENSP00000337194, Human)

Protein Percentage 97.32%
CDS Percentage 90.83%
Ka/Ks Ratio 0.02497 (Ka = 0.0123, Ks = 0.4918)

Prpf4b ENSMUSG00000021413 (Mouse)

Gene Details

PRP4 pre-mRNA processing factor 4 homolog B (yeast)

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000077019, Mouse)

Protein Percentage 94.34%
CDS Percentage 87.59%
Ka/Ks Ratio 0.04158 (Ka = 0.0277, Ks = 0.6668)

Prpf4b ENSRNOG00000016705 (Rat)

Gene Details

PRP4 pre-mRNA processing factor 4 homolog B (yeast) (Prpf4b), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000022902, Rat)

Protein Percentage 94.54%
CDS Percentage 87.92%
Ka/Ks Ratio 0.04065 (Ka = 0.026, Ks = 0.6399)

Genome Location

Sequence Coding sequence

Length: 3027 bp    Location: 21082564..21041484   Strand: -
Raw sequence   
>XM_004847758.1
ATGGCCGCCGCGGAGCCCCAGGCGCTGCGGGAGCAGCCGGAGATGGAAGATGCTGATAATTCTGAAAAAAGTGTAAATGAAGAAAATGGAGAAGTATCAGAAGACCAGTCCCAAAATAAACATAGTCGTCACAAAAAAAAGAAACATAAACACAGAAGTAAACACAAGAAACATAAACATTCCTCAGAAGAAGACAAGGATAAAAAACATAAACATAAGCATAAACATAAGAAACACAAAAGAAAAGAGATGATTGACGCTTCTGACAAAGAAGGTATGTCTCCCGCAAAAAGAGCTAAGCTTGATGCTTTGGCTTTGCTAGAAGACTTGGAGAAGCAGAGGGCCTTGATTAAAGTCGAGCTCGATAACGAGCTCATGGACGGCAAGGTCCAGTCTGGGATGGGACTCATTTTACAAGGTTATGAGTCTGGCTCTGAAGAAGAAGGGGAGATTCATGAAAAGGTGAGAAATGGAAATAGGTCTGGTACCAGATCCTCGAGTACAAAGGGGAAACTCGAAGTTGTGGACAATAAAAATAGTACAAAAAAACGGAGTAAAAGCAGATCCAAAGAACGGACTAGACATAGGTTGGATAAAAAGAAAAGTAAGGGAGGTATTGAAACAGTTAAAGAGAAAACAACTAGGAGCAAGTCAAAGGAGAGGAAGAAGTCCAAAAGTCCATCCAAAAGAAGCAAGTCCCAAGACCAAGCAAGAAAATCAAAGTCCCCTATCCTTAGGAGGCGATCTCAAGAGAAAATTGGCAAGGCCAGATCTCCTACTGATGAGAAGGTTAAAATTGAAGATAAAAGTAAGACAAAAGATAGGAAAAAATCCCCAATTATAAATGAAAGTAGAAGTCGAGATCGAGGTAAAAAATCTAGATCCCCGGTTGACCTACAAGGTAAATCCAAAGACAGAAGATCGCGGTCCAAAGAGAGAAAATCCAAAAGGTCTGAAGTTGATAAAGAAAAAAAGCCTATTAAGTCTCCCTCTAAGGATGCTTCCTCTGGGAAGGAAAACAGGTCACCTAGTAGAAGACCTGGTCGTAGCCCTAAGAGAAGGAGTCTGTCTCCTAAACAACGTGATAAGTCGAGGAGAAGTAGATCTCCACTCTTGAATGATAGAAGATCTAAGCAGAGCAAATCACCTTCTCGAACTCTGTCTCCGGGTAGAAGAGCCAAGAGCCGATCTTTAGAAAGAAAACGTAGGGAGCCAGAGAGGAGACGACTTTCTTCTCCAAGAACACGCCCTCGAGATGACCTCCTCAGCAGACGGGAGCGGTCCAAGGATGCCAGCCCGGTCAGCAGGTGGTCTCCCACCAGAAGGAGAAGCCGGTCTCCCATCAGAAGGCGCTCCCGCTCTCCACTCAGGCGCAGCAGGTCCCCCCGGAGGAGAAGCAGGTCCCCCCGGAGAAGAGACCGAGGCCGCAGGAGCAGGTCACGCTTGCGGAGGAGGTCTCGGTCACGGGGAGGTCGCAGGCGGAGGAGCAGAAGCAAAGTAAAGGAAGACAGATTCAAAGGAAGTCTTTCGGAAGGGATGAAAGCTGAGCAAGAGTCTTCATCTGATGATAACCTCGAGGATTTTGATGTAGAGGAAGAGGATGAAGAAGCACTAATAGAACAGAGAAGAATACAGAGGCAAGCAATTGTTCAGAAATATAAGTACCTGGCTGAAGACAGCAATATGTCTGTGCCATCGGAACCCAGCAGCCCCCAGAGCAGTACTCGAACACGATCACCTTCTCCAGACGACATCCTGGAGCGGGTGGCCGCCGACGTCAAAGAGTACGAGCGGGAAAACGTTGACACGTTTGAGGCCTCAGTAAAAGCCAAGCATAATCTCATGACAGTTGAACAGAATAATGGTTCATCTCAGAAGAAGCTGTTGGCACCTGATATGTTTACAGAATCTGATGATATGTTTGCTGCCTATTTTGATAGTGCTCGTCTTCGGGCTGCTGGCATTGGAAAAGATTTCAAAGAGAATCCCAACCTCAGAGATAACTGGACTGATGCAGAAGGCTATTACCGTGTGAACATAGGTGAAGTCCTTGATAAGCGTTACAATGTGTATGGCTACACTGGGCAAGGTGTGTTCAGCAATGTTGTGCGAGCCAGAGATAATGCACGAGCCAACCAAGAAGTGGCTGTGAAGATCATCAGGAATAATGAGCTCATGCAAAAGACTGGTTTAAAAGAACTGGAGTTCTTGAAAAAACTTAATGATGCTGATCCCGATGACAAATTCCATTGTCTGCGCCTCTTCAGACACTTTTATCACAAGCAACATCTCTGTCTCGTATTTGAGCCTCTCAGTATGAATTTACGAGAGGTATTAAAAAAATATGGCAAAGATGTCGGTCTTCATATTAAAGCTGTAAGATCGTACAGCCAGCAGTTGTTCCTGGCATTGAAACTCCTGAAAAGATGCAACATCCTGCACGCAGATATCAAGCCAGACAATATCCTGGTTAATGAATCAAAAACGATTTTAAAGCTCTGTGATTTTGGGTCGGCCTCACACGTTGCGGATAATGACATAACACCTTACCTTGTCAGTAGATTTTATCGGGCGCCTGAGATCATTATAGGTAAAAGCTATGACTATGGTATAGATATGTGGTCTGTAGGGTGTACCTTGTATGAGCTCTATACTGGAAAAATTTTGTTTCCTGGTAAAACCAATAACCACATGTTGAAGCTTGCCATGGATCTCAAAGGAAAGATGCCAAATAAGATGATTCGGAAAGGTGTATTTAAAGATCAGCATTTTGATCAAAATCTCAACTTCATGTACATAGAAGTTGATAAAGTAACAGAGAGGGAGAAAGTTACTGTCATGAGCACCATTAATCCAACTAAGGACCTATTGGCTGACTTGATTGGGTGCCAGCGACTTCCTGAAGACCAACGTAAAAAAGTACACCAGCTAAAGGACTTGTTGGACCAGATCCTAATGTTGGACCCAGCTAAACGAATTAGCATCAACCAGGCCCTACAGCATGCATTCATCCAGGAAAAAATTTAA

Related Sequences

XP_004847815.1 Protein

Prpf4b PREDICTED: serine/threonine-protein kinase PRP4 homolog isoform X1 [Heterocephalus glaber]

Length: 1008 aa      View alignments
>XP_004847815.1
MAAAEPQALREQPEMEDADNSEKSVNEENGEVSEDQSQNKHSRHKKKKHKHRSKHKKHKHSSEEDKDKKHKHKHKHKKHKRKEMIDASDKEGMSPAKRAKLDALALLEDLEKQRALIKVELDNELMDGKVQSGMGLILQGYESGSEEEGEIHEKVRNGNRSGTRSSSTKGKLEVVDNKNSTKKRSKSRSKERTRHRLDKKKSKGGIETVKEKTTRSKSKERKKSKSPSKRSKSQDQARKSKSPILRRRSQEKIGKARSPTDEKVKIEDKSKTKDRKKSPIINESRSRDRGKKSRSPVDLQGKSKDRRSRSKERKSKRSEVDKEKKPIKSPSKDASSGKENRSPSRRPGRSPKRRSLSPKQRDKSRRSRSPLLNDRRSKQSKSPSRTLSPGRRAKSRSLERKRREPERRRLSSPRTRPRDDLLSRRERSKDASPVSRWSPTRRRSRSPIRRRSRSPLRRSRSPRRRSRSPRRRDRGRRSRSRLRRRSRSRGGRRRRSRSKVKEDRFKGSLSEGMKAEQESSSDDNLEDFDVEEEDEEALIEQRRIQRQAIVQKYKYLAEDSNMSVPSEPSSPQSSTRTRSPSPDDILERVAADVKEYERENVDTFEASVKAKHNLMTVEQNNGSSQKKLLAPDMFTESDDMFAAYFDSARLRAAGIGKDFKENPNLRDNWTDAEGYYRVNIGEVLDKRYNVYGYTGQGVFSNVVRARDNARANQEVAVKIIRNNELMQKTGLKELEFLKKLNDADPDDKFHCLRLFRHFYHKQHLCLVFEPLSMNLREVLKKYGKDVGLHIKAVRSYSQQLFLALKLLKRCNILHADIKPDNILVNESKTILKLCDFGSASHVADNDITPYLVSRFYRAPEIIIGKSYDYGIDMWSVGCTLYELYTGKILFPGKTNNHMLKLAMDLKGKMPNKMIRKGVFKDQHFDQNLNFMYIEVDKVTEREKVTVMSTINPTKDLLADLIGCQRLPEDQRKKVHQLKDLLDQILMLDPAKRISINQALQHAFIQEKI