Sequence details NCBI ID: XM_004847632.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Nup153
Gene Name nucleoporin 153kDa, transcript variant X1
Entrez Gene ID 101706615

Database interlinks

Part of NW_004624756.1 (Scaffold)

For more information consult the page for NW_004624756.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

NUP153 ENSCPOG00000004007 (Guinea pig)

Gene Details

nucleoporin 153kDa

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000003615, Guinea pig)

Protein Percentage 88.34%
CDS Percentage 91.88%
Ka/Ks Ratio 0.33426 (Ka = 0.0597, Ks = 0.1787)

NUP153 ENSG00000124789 (Human)

Gene Details

nucleoporin 153kDa

External Links

Gene Match (Ensembl Protein ID: ENSP00000262077, Human)

Protein Percentage 84.5%
CDS Percentage 88.92%
Ka/Ks Ratio 0.32409 (Ka = 0.0835, Ks = 0.2577)

Nup153 ENSMUSG00000021374 (Mouse)

Gene Details

nucleoporin 153

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000021803, Mouse)

Protein Percentage 80.7%
CDS Percentage 84.96%
Ka/Ks Ratio 0.28249 (Ka = 0.1112, Ks = 0.3937)

Nup153 ENSRNOG00000001456 (Rat)

Gene Details

nucleoporin 153 (Nup153), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000001979, Rat)

Protein Percentage 80.4%
CDS Percentage 84.49%
Ka/Ks Ratio 0.27214 (Ka = 0.1134, Ks = 0.4167)

Genome Location

Sequence Coding sequence

Length: 4437 bp    Location: 8889992..8959115   Strand: +
Raw sequence   
>XM_004847632.1
ATGGCCTCGGGAGCCGGAGGAGGAGGTGGTGGAGGAGGAGGGGGCGGTGGCGGCAAAATCCGGACGCGGCGTTGCCACCAGGGGCCAATCAAGCCTTACCAACAGGGGCGACCCCAGCGCCAGGGCATTCTTAGCAGGGTTACAGAGTCTGTTAAGAATATTGTGCCAGGGTGGCTACAGAGATACTTCAGTAGGAATGAAGATGTGTGTAGCTGCTCAACAGACACCAATGAGGTACCACACTGGCCAGAAAATAGAGAAGATGACCGTGTGATGTATGCGAGTGAGGAGAATACTGAGATCAGTGATGAGCGAATCACTCCTGAGCCAGCAGTCAGTAGTGCAGCAGAACCTTCAACAACTAGTACTGCTTCAGATTACCCAGATGTATTAACAAGACCTTCACTTCATCGGAGCCATCTGAATCTCTCTATGTTGGAATCCCCTGCATTAAATTGTCAGCCATCCACATCTTCGGCATTTCCAATTGGCAGTTCTGGATTTTCCCTTGTAAAGGAAATTAAAGATTCTACCTCTCAACATGATGATGATAACATCTCAACTACCAGTGGTTTTTCTTCAAGAGCATCTGATAAAGATATAGCTGTTTCAAAGAACACTTCATTGCCACATCTGTGGTCTCCAGAGCCTGACCGCTCTCAGTCACTCTCACAGCACACTGCCTCCAGCTCAAAAAAACCAGCATTCAACTTGTCTGCCTTTGGAACACTTTCCCCTTCACTTGGGAATTCTTCAAATCTTAAAACAAGTCAGCTTGGAGATTCTCCTTTTTATCCTGGGAAAACAACATATGGTGGGGCAGCAGCTGCTGTAAGACAGTCAAAGCTACGGAATACACCTTATCAGGCACCAGTGAGAAGACAGATGAAAGCTAAGCAACTTAACGCACAGTCTTACGGTGTGACCAGTTCTACAGCTAGACGAATATTGCAGTCTTTAGAGAAGATGTCAAGCCCTTTGGCGGATGTGAAAAGAATTCCATCTGTTGTTTCTTCTCCTCTGAATTCTCCTCTTGATAGGAGTGGAATGGACACCACAGATATTTGGGCCAAAAGACAAAAGGTGGACTCTCAGCATCCCCCTGTTCAGAGACTTATGACCCCAAAGCCAATTTCTATAGCAACAAATAGAACTGTTTATTTTAAGCCATCTCTGACCCCATCTGGGGAATTAAGGAAGACTAATCAGAGAATAGATAAAAAGGACAGTACTGGATATGAAAAGAATATGACACTCAGACAAAATAGAGAACAAGAAAGTGGCTTTTCATACCCAAACTACAGTATTCCTGCAGCCAATGGTTTGTCTTCTGGCGTCGGTGGTGGAGGTGGCAAGATGAGACGAGAGAGAACACGCTTTATTGCTTCTAAACCTCTGGAGGAGGAGGAAATGGACATACCAGTATTACCAAAAATCTCTCTACCGATCTCCAGTTCTTCACTGCCTACCTTCAATTTTAGTTCCCCTGAGATCACAACTTCCTGTGCATCGTCCTTCAGTCCTTCTCAATCATTAGCAGACAAGGTACAAATGACCTCTCCAAGCAACACTGGCAGCCCTATGTTTAGATTTTCATCTCCAATTGTAATATCTACTGAGGCAGTTGTACTATCTCCATCATCAATTAGATTTACATTTAGTATGCCTGTTGCAAAAACAGAAATTTCTGGCTCTCGTAGTACTTCAGAACCAGTTATAAGTAGTTCCGCTCAAGACAACGTTGCAGTGAACACTACAAACTGTAAGAAGCAAAGTGAAGATTATGAGGGCGTTTTAAAACCTGCAAAAATCCTGAAAGAAGGAAGTGTTCTAGATGTTCTGAAAAGCCCGGGTTTCACCTCACCAAAAGTAGATTCTGTTGCTGCTCAGCCTACTATGACAAGCCCTGAAGTTTATACAAGACCAGCGATAAGTACTTTTTCTTCTGGTGGAGTTGGGTTTGGGGAAAGATTGAAAGCTAGCTCATCCTGGCAGTGTGATACATGTCTGCTCCAGAACAGTGTTACAGACAAGAAGTGTGTAGCCTGTCAAGCAACAAAATTGCCACCAGGAGAAACTGCCAAACAGACTGAAACTGGGACACCAAGCAAAAGTGGCAAAGCAGTTCTTTCTGGATCAGGAACAGGCTTTGGAGACAAGTTTAAACCGGCAATAGGATCTTGGGATTGTGATACCTGCTTAGTGCAAAATAAACCTGAAGCAATGAAATGTGTGGCCTGTGAAACCCCGAAACCTGGAACTGGTGTGAAGCGACCCCTGACATTGACAGTGGTTTCAGAAAATGCTGTAACTACGACTGCTTCATCTTCTAGCTGCACTGTTACCTCTGGTACCTTAGGATTTGGAGATAACTTCAAAAGGCCTGTGGGATCTTGGGAATGTCCAGTATGCTGTGTTTTTAACAGTGCAGAAGACAACAAATGTGTGGCCTGTATGTCTGAGAAAGCAGGAACCTCAGTCCCTGCTTCTAGTAGCAGCACTGTACCCATCTCTGTGTCTTCTGGGAGTTCTCTAGGATTGGACAAGTTCAAAAAGCCTGAGGGAAGCTGGGACTGTGAAGTGTGCCTAGTGCAGAATCAAGCAGACTCTGCCAAGTGTGTGGCGTGTGAAAGTGCAAAGCCAGGCACAAAGTCTGAGTTTAAGGGGTTTGGCACATCTTCCTCATCTTCAGATCCACCACCCTTATCCTTCAAATTTGGTATTCCAGCATCATCATCTGGGCCTTCTCAGACTTTAGCAAACACTGGAACTTTTAAATTTGGAGATCAGGGAGTATTCAAAATAGGTGTATCATCTGACTCTGGGTCTGTAAACCCCGTGACTGAAGGCTTTAAATTTTCTAAACCAACTGCAGATTTCAAATTTGGAGTTTCATCTGATTCTAAAACTGAAGAAGTTAAAAAAGACAGTAAGAATGATAATAGTTTTAAGTTTGGACTTTCTTCTGGTTTAAGCAACCCAACTTCTTTAGCTCCATTTCAGTTTGGTGTGTCTAATCCTGGGCAGCAAGAAAAGAAAGAGGAACCACCTAAATCTTCTTCTGCAGGCTTTAGCTTTGGTACTGATATTATTAACCCTGTCCCTGCTGCTACTGATACCACAGTGACCTCTGAGAACAAGACCAGCTTCAGCTTTGGAACCATAGAAACCAAGAGTGTCTCAGTGGCTCCTTTCACATGCAAGACAACAGAAGCAAAAAAAGAAGAAGTATCTGCTGCCAAGGGAGGGTTCACTTTTGGCAACATGGAAACTGCCCCTCTGTCATCTGCCTCAATGTTTGGTTTGGGAAGGACAGAAGAAAAGCAGAAAGAGACTGTCACTTCTACGTCTCTGGCTTTTGGGAAGAAAGCTGACAATGATGAAGAGCCAAAATGTCCACCAGTATTTTCCTTTGGGAAGTCAGAGCAAACCAAAGATGAGAGTTCTACACAGTCAGTGTTTAGTTTCAGTGTGGCAAAACCATCTGAGAAGGAATCTGAGCAGCCAACAAAGGCCACTTTCACTTTTGGAGCTCAAACCAGTACCACATCTGATCAAGGTACAGCAAAGCCAGTTTTTAGTTTTTTGAACAACAGTTCCTCTAGTTCCAGTGCACCAGCCACTTCAGCTGGTGGTGGCATTTTTGGTAGTTCCACTTCCTCCTCCAATACACCTGTGGGTACCTTTGTGTTTGGACAGGCCAGCAATCCTGTGACCAGCTCTGCCTTTGGTAACTCTGCAGAATCCAGTACATCTCAGTCGTTGCTATTTTCTCAGGATAGCAAACCAGCAACCACATCCAGTACAGGTACAGCTGTCAACCAGTTTGTCTTTGGACCAGGAGCCAGCAGTAATAGTACTGCAACCTCTGGTTTCAGCTTTGGAGCAACAACTACATCTAGCTCTGCAGGATCCTCCTTCATATTTGGCCCTGGACCTCCAGCACCATCTGCTAGTCCAGCATTTGGTGCTAACCAGACCCCAACATTTGGACAAAGTCAAGGTGCCAGTCAGCCTAATCCCCCAAGCTTTGGATCTATATCATCATCAACAGCATTGTTTTCTGCTGGTTCCCAGCCTGTACCACCCACTTTTGGAACAGTATCAAGCAGCAGCCAGCCTCCTGTGTTTGGACAGCAGCCTAGTCAGTCTACATTTGGCTCTGGAACAACTCCTAATTCCAGTTCGGTTTTCCAATTTGGCAGCAGCACTACCAATTTCAACTTCACAAACAATAATCCATCAGGAGTGTTCACATTTGGTGCAAATCCCAGTATACCTGCAGCTTCAGCCCAGCCTTCAGGCTCAGGGAGCTTTCCCTTTAGCCAGTCGTCAGCAGCATTTACAGTAGGGTCAAATGGGAAAAATATGTTCTCTTCTTCTGGAACTTCAGTTTCTGGTCGCAAGATAAAGACTGCTGTTAGACGCAGAAAATAA

Related Sequences

XP_004847689.1 Protein

Nup153 PREDICTED: nuclear pore complex protein Nup153 isoform X1 [Heterocephalus glaber]

Length: 1478 aa      View alignments
>XP_004847689.1
MASGAGGGGGGGGGGGGGKIRTRRCHQGPIKPYQQGRPQRQGILSRVTESVKNIVPGWLQRYFSRNEDVCSCSTDTNEVPHWPENREDDRVMYASEENTEISDERITPEPAVSSAAEPSTTSTASDYPDVLTRPSLHRSHLNLSMLESPALNCQPSTSSAFPIGSSGFSLVKEIKDSTSQHDDDNISTTSGFSSRASDKDIAVSKNTSLPHLWSPEPDRSQSLSQHTASSSKKPAFNLSAFGTLSPSLGNSSNLKTSQLGDSPFYPGKTTYGGAAAAVRQSKLRNTPYQAPVRRQMKAKQLNAQSYGVTSSTARRILQSLEKMSSPLADVKRIPSVVSSPLNSPLDRSGMDTTDIWAKRQKVDSQHPPVQRLMTPKPISIATNRTVYFKPSLTPSGELRKTNQRIDKKDSTGYEKNMTLRQNREQESGFSYPNYSIPAANGLSSGVGGGGGKMRRERTRFIASKPLEEEEMDIPVLPKISLPISSSSLPTFNFSSPEITTSCASSFSPSQSLADKVQMTSPSNTGSPMFRFSSPIVISTEAVVLSPSSIRFTFSMPVAKTEISGSRSTSEPVISSSAQDNVAVNTTNCKKQSEDYEGVLKPAKILKEGSVLDVLKSPGFTSPKVDSVAAQPTMTSPEVYTRPAISTFSSGGVGFGERLKASSSWQCDTCLLQNSVTDKKCVACQATKLPPGETAKQTETGTPSKSGKAVLSGSGTGFGDKFKPAIGSWDCDTCLVQNKPEAMKCVACETPKPGTGVKRPLTLTVVSENAVTTTASSSSCTVTSGTLGFGDNFKRPVGSWECPVCCVFNSAEDNKCVACMSEKAGTSVPASSSSTVPISVSSGSSLGLDKFKKPEGSWDCEVCLVQNQADSAKCVACESAKPGTKSEFKGFGTSSSSSDPPPLSFKFGIPASSSGPSQTLANTGTFKFGDQGVFKIGVSSDSGSVNPVTEGFKFSKPTADFKFGVSSDSKTEEVKKDSKNDNSFKFGLSSGLSNPTSLAPFQFGVSNPGQQEKKEEPPKSSSAGFSFGTDIINPVPAATDTTVTSENKTSFSFGTIETKSVSVAPFTCKTTEAKKEEVSAAKGGFTFGNMETAPLSSASMFGLGRTEEKQKETVTSTSLAFGKKADNDEEPKCPPVFSFGKSEQTKDESSTQSVFSFSVAKPSEKESEQPTKATFTFGAQTSTTSDQGTAKPVFSFLNNSSSSSSAPATSAGGGIFGSSTSSSNTPVGTFVFGQASNPVTSSAFGNSAESSTSQSLLFSQDSKPATTSSTGTAVNQFVFGPGASSNSTATSGFSFGATTTSSSAGSSFIFGPGPPAPSASPAFGANQTPTFGQSQGASQPNPPSFGSISSSTALFSAGSQPVPPTFGTVSSSSQPPVFGQQPSQSTFGSGTTPNSSSVFQFGSSTTNFNFTNNNPSGVFTFGANPSIPAASAQPSGSGSFPFSQSSAAFTVGSNGKNMFSSSGTSVSGRKIKTAVRRRK