Sequence details NCBI ID: XM_004847586.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Lrrc16a
Gene Name leucine rich repeat containing 16A, transcript variant X1
Entrez Gene ID 101716594

Database interlinks

Part of NW_004624756.1 (Scaffold)

For more information consult the page for NW_004624756.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

LRRC16A ENSCPOG00000012999 (Guinea pig)

Gene Details

leucine rich repeat containing 16A

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000011704, Guinea pig)

Protein Percentage 95.05%
CDS Percentage 93.08%
Ka/Ks Ratio 0.12448 (Ka = 0.0257, Ks = 0.2066)

LRRC16A ENSG00000079691 (Human)

Gene Details

leucine rich repeat containing 16A

External Links

Gene Match (Ensembl Protein ID: ENSP00000331983, Human)

Protein Percentage 93.21%
CDS Percentage 89.59%
Ka/Ks Ratio 0.09706 (Ka = 0.0364, Ks = 0.3746)

Lrrc16a ENSMUSG00000021338 (Mouse)

Gene Details

leucine rich repeat containing 16A

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000072662, Mouse)

Protein Percentage 88.83%
CDS Percentage 83.97%
Ka/Ks Ratio 0.08626 (Ka = 0.0609, Ks = 0.7055)

Lrrc16a ENSRNOG00000016576 (Rat)

Gene Details

leucine rich repeat containing 16A (Lrrc16a), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000056268, Rat)

Protein Percentage 88.61%
CDS Percentage 83.58%
Ka/Ks Ratio 0.08736 (Ka = 0.0629, Ks = 0.7205)

Genome Location

Sequence Coding sequence

Length: 4122 bp    Location: 1750887..1446305   Strand: -
Raw sequence   
>XM_004847586.1
ATGACCGAGGAGAGCGCCGACGTCCCCAGGGAGCTGCTAGAAAGCATAAAGGATGTTATTGGCAGGAAGGTAAAGATTGCAGTGAAGAAGAAAGTAAAGTTGGAAGTTAAGGGAGACAAAGTTGAAAACAAAGTGCTGGTGCTCACGTCATGCCGGGCTTTCCTGGTGACAGCACGCATCCCCACCAAGCTCGAGTTGACCTTCAGCTACTTGGAGATTCATGGCGTTGTGTGCACCAAGCCAGCACAGATGGTTGTGGAGACAGAGAAGTGCAACATTTCCATGAAGATGGCATCGCCTGAGGACGTGAGCGATGTCTTGGGACACATTGGCACCTGCCTGCGGAAGATCTTCCCTGGCCTCTCACCTGTGAGAATTATGAAAAAGGTCTCCATGGAGCCGTCCGAGCGCCTGGCCAGTCTCCAGGCTCTGTGGGACAGCCAGACCGTGGCCGAGCAGGGACCCTGTGGTGGATTTTCTCACATGTATGCCTGTGTCTGTGACTGGCTTGGATTTTCATACCGGGAGGAAGTACAGTGGGATGTGGATACAATTTATCTAACACAAGACACCAGGGAATTGAATTTGCAAGACTTCAGTCACCTTGACCACAGGGACCTAATACCTATCATTGCTGCACTGGAATATAATCAGTGGTTCACAAAGTTGTCCTCTAAGGATCTGAAACTGTCCGCAGATGTCTGTGAGCAGATCTTGAGGGTGGTGAGTAGGTCCAATCGATTGGAAGAACTGGTATTGGAAAATGCTGGACTTAGAACAGATTTTACACAAAAACTGGCCTTCGCTCTAGCACATAATCCCAACTCAGGACTCCACACGATCAACCTTGCTAGCAACCCGCTGGAGGACAGAGGTGTGTCCTCTTTAAGTATTCAGTTTGCCAAACTCCCAAAGGGATTAAAGCATTTAAATTTATCTAAAACCTCATTATCACCTAAAGGGGTGAACAGCCTTTCTCAGTCCCTCAGTGCCAACCCGCTGACTGCCTCCACCCTCACCCACCTGGACCTCTCAGGGAATGTTCTTCGTGGAGATGACCTCTCGCACATGTATAATTTTTTGGCCCAGCCAAATGCCATTGCTTATCTGGATTTGTCCAATACAGAATGTTCCCTGGACATGGTCTGCGGCGCTCTGCTCCGAGGATGCCTCCAGTACTTAGCTGTGCTCAATCTCTCCAGAACTGTCTTTTCCCACCGGAAAGGAAAAGAGGTGCCCCCGTCTTTCAAGCAATTTTTTAGTAGTTCTCTAGCACTGATGCAAATCAACCTTTCTGGCACAAAACTGTCTCCTGAGCCCTTAAAAGCGCTGCTGTTGGGTCTGGCTTGTAATCATAATTTGAAAGGAGTTTCATTGGATCTCAGCAACTGTGAGCTGAGGTCAGGAGGAGCGCAAGTCTTAGAAGGCTGCATTGCTGAAATCCACAACATTGCCAGCTTAGACATCTCCGATAATGGTTTAGAATCTGACCTATCTACTTTAATAGTGTGGCTCAGTAAAAACAGATCAATCCAACACCTGGCATTAGGCAAAAATTTTAATAATATGAAATCCAAAAATCTGACACCTGTCTTGGACAACTTAGTACAGATGATTCAAGATGAAGACTCACCTCTGCAGTCCTTGTCCCTGGCTGACTCAAAACTCAAGACCGAGGTCACCATCATCATCAATGCCCTGGGAAGCAACACCTCCCTGACCAAAGTGGACATCAGTGGGAATGGGATGGGGGACATGGGAGCAAAGATGCTGGCCAAAGCTCTGCAGATCAATACCAAGCTCAGGACTGTGATATGGGACAAGAACAACATTACTGCACAAGGCTTTCAAGATATAGCTGTTGCCATGGAAAAGAACTACACGTTGAGATTTATGCCAATTCCCATGTATGATGCTTCTCAAGCCCTGAAAACAAACCCTGAAAAAACGGAAGAGGCTTTGCAAAAGATAGAAAACTATCTGCTGCGGAATCATGAGACTAGAAAATACCTTCAGGAGCAGGCCTACCGCCTCCAGCAGGGCATTGTCACCAGCACCACCCAGCAGATGATTGACAGAATATGTGTGAAAGTACAAGATCATCTCAACTCCTTGCGAAATTGTGGGGGAGATGCTATCCAGGAAGATTTAAAATCAGCAGAACGGCTCATGCGTGATGCGAAGAACTCTAAAACATTGTTACCAAATCTGTACCATGTTGGTGGTGTGTCTTGGGCAGGAGCCAGTGGCTTGTTATCCAATCCCATTCAGGAGACCCTGGAATCGATGGCAGGAGAAGTTACAAGAGTTGTGGATGAACAACTGAAGGCTCTGCTTGAATCCATGGTTGATGCTGCCGAGAACCTTTGTCCCAATGTGATGAGAAAAGCCCACATTCGACAAGACTTGATTCATGCCAGCACCGAAAAGATTTCCGTTCCACGTACCTTTGTTAAAAATGTCCTGTTGGAGCAGTCTGGAATTGATATCCTTAACAAAATTAGCGAAGTGAAGCTGACGGTGGCCTCCTTCCTGTCTGATCGGATTGTGGATGAGATCCTGGATGCACTCTCACACTGCCATCATAAACTGGCTGAGCATTTCAGCAGACGTGGCAAGACCCTTCCTCAGCAAGAGTCCCTGGAGATCGAACTGGCTGAGGAGAAGCCAGCAAAGCTCTCCCTTATCACCTTGGAGGAGCTGACAGAGGTAGAGCGCTTAGAAGACCTGGATACTTGTATGATGACTCCTAAATCCAAAAGGAAGAGTATTCATAGCCGGATGCTGCGGCCTGTTTCCAGGGCCTTTGAAATGGAGTTTGACCTGGATAAAGCCCTGGAAGAGGTGCCGATTCATGTGGAAGACCCACCTTTCCCATCCATCAAGCAAGAGAAGCGGAGCTCGGGGTTCATCTCCGAATTGCCCTCAGAAGAGGGCAGGAAGCTGGAACACTTTACTAAGCTGAGGCCAAAGCGGAACAAGAAGCAGCAGCCCACGCAGGCAGCGGTTTGTGCTGCTGGCATAGTCTCCCAAGATGGGGAGCAGAATGGTCTTATGGGGAGAGTGGATGAAGGTGTAGATGAATTTTTCACTAAGAAAGTGACCAAAATGGATTCCAAGAGGACTTCCTCAAGAGGCTCCGAGTCCCACGAGCTTAGTGAAGGAGGAGATGAAAAGAAGAAGCGAGATTCTCGGAAAAGCAGCTTTCTCAATTTAATCAAGTCCCGATCCAAGTCTGAGAGACCCCCAATGGTCTTGATGACAGAAGAACCCTCCTCACCAAAAGGGGCCATCAGAAGTTCAGCCACAGATGCCCCCAGAAGGGAGCCGAAGGCCTCAGAGCACGATGGGAATTCAGACATCGCAGAGGAGATGAAGACACCAGACTCCCTTGAGGAGAGCCCAGGCGAGGAAGTAGGGCGCCTGGAGCGTGGGGACAGCAGGAGCAGCCCGCAGGGGGGACGCAGGTATGGCGTCCAGGTGATGGGTAGTGGTCTGCTAGCTGAGATGAAGGCCAAGCAGGAGCGGAGAGCTGCCAGCGCCCAGAAGAAACTTGGGAATGATGCCATATCCCAGGATTTTCCAAGCCCAGCTTTGAGCAGCGTGGAACGGTTGGACGGAGGTGGCGCAGTGCCTAAATTGCACCCAGGCCTTCCAGAGAACCGCTTTGGTTTGGGCACTCCAGAAAAGAATGCCAAAGCAGAACCCAAAGTGGAAGTGGTCTTGAGGTCTCGCAGCTCCTCCAGCACACCGACCAGCCCAAAGCCCCTCCTGCAGTCCCCCAAGCCCACCCTGGCAGCACGGCCCACCATCCCGCAGAAACCGAGAACGGCCTCCCGGCCTGAGGATGTCCCAGACTCTCCCTCTGGCCCTAGTTCCCCTAAAGTTGCTCTGCTTCCTCCTATCCTGAAAAAAGTTCCCTCAGACAAGGAGAGAGATGCACAGAATAACCCCCAGCCCAGCCCCAGGACATATTCCCAGGAAGTGTCGAGGAGAAGCTGGGGCCCGCAGGCCCAGGACTATCAAGAGCAAAAGCAACAGTCTTCCAATAAAGACAGCCTCCAAGGCAGCAAATCTAGTGACTCCGGAGAAGAAGCAGAAAAAGAATTTATTTTTGTGTAA

Related Sequences

XP_004847643.1 Protein

Lrrc16a PREDICTED: leucine-rich repeat-containing protein 16A-like isoform X1 [Heterocephalus glaber]

Length: 1373 aa      View alignments
>XP_004847643.1
MTEESADVPRELLESIKDVIGRKVKIAVKKKVKLEVKGDKVENKVLVLTSCRAFLVTARIPTKLELTFSYLEIHGVVCTKPAQMVVETEKCNISMKMASPEDVSDVLGHIGTCLRKIFPGLSPVRIMKKVSMEPSERLASLQALWDSQTVAEQGPCGGFSHMYACVCDWLGFSYREEVQWDVDTIYLTQDTRELNLQDFSHLDHRDLIPIIAALEYNQWFTKLSSKDLKLSADVCEQILRVVSRSNRLEELVLENAGLRTDFTQKLAFALAHNPNSGLHTINLASNPLEDRGVSSLSIQFAKLPKGLKHLNLSKTSLSPKGVNSLSQSLSANPLTASTLTHLDLSGNVLRGDDLSHMYNFLAQPNAIAYLDLSNTECSLDMVCGALLRGCLQYLAVLNLSRTVFSHRKGKEVPPSFKQFFSSSLALMQINLSGTKLSPEPLKALLLGLACNHNLKGVSLDLSNCELRSGGAQVLEGCIAEIHNIASLDISDNGLESDLSTLIVWLSKNRSIQHLALGKNFNNMKSKNLTPVLDNLVQMIQDEDSPLQSLSLADSKLKTEVTIIINALGSNTSLTKVDISGNGMGDMGAKMLAKALQINTKLRTVIWDKNNITAQGFQDIAVAMEKNYTLRFMPIPMYDASQALKTNPEKTEEALQKIENYLLRNHETRKYLQEQAYRLQQGIVTSTTQQMIDRICVKVQDHLNSLRNCGGDAIQEDLKSAERLMRDAKNSKTLLPNLYHVGGVSWAGASGLLSNPIQETLESMAGEVTRVVDEQLKALLESMVDAAENLCPNVMRKAHIRQDLIHASTEKISVPRTFVKNVLLEQSGIDILNKISEVKLTVASFLSDRIVDEILDALSHCHHKLAEHFSRRGKTLPQQESLEIELAEEKPAKLSLITLEELTEVERLEDLDTCMMTPKSKRKSIHSRMLRPVSRAFEMEFDLDKALEEVPIHVEDPPFPSIKQEKRSSGFISELPSEEGRKLEHFTKLRPKRNKKQQPTQAAVCAAGIVSQDGEQNGLMGRVDEGVDEFFTKKVTKMDSKRTSSRGSESHELSEGGDEKKKRDSRKSSFLNLIKSRSKSERPPMVLMTEEPSSPKGAIRSSATDAPRREPKASEHDGNSDIAEEMKTPDSLEESPGEEVGRLERGDSRSSPQGGRRYGVQVMGSGLLAEMKAKQERRAASAQKKLGNDAISQDFPSPALSSVERLDGGGAVPKLHPGLPENRFGLGTPEKNAKAEPKVEVVLRSRSSSSTPTSPKPLLQSPKPTLAARPTIPQKPRTASRPEDVPDSPSGPSSPKVALLPPILKKVPSDKERDAQNNPQPSPRTYSQEVSRRSWGPQAQDYQEQKQQSSNKDSLQGSKSSDSGEEAEKEFIFV