Sequence details NCBI ID: XM_004847497.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Pde6b
Gene Name phosphodiesterase 6B, cGMP-specific, rod, beta
Entrez Gene ID 101705017

Database interlinks

Part of NW_004624755.1 (Scaffold)

For more information consult the page for NW_004624755.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

PDE6B ENSCPOG00000022569 (Guinea pig)

Gene Details

phosphodiesterase 6B, cGMP-specific, rod, beta

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000017263, Guinea pig)

Protein Percentage 92.62%
CDS Percentage 90.83%
Ka/Ks Ratio 0.08983 (Ka = 0.0365, Ks = 0.4059)

PDE6B ENSG00000133256 (Human)

Gene Details

phosphodiesterase 6B, cGMP-specific, rod, beta

External Links

Gene Match (Ensembl Protein ID: ENSP00000420295, Human)

Protein Percentage 88.99%
CDS Percentage 87.08%
Ka/Ks Ratio 0.05564 (Ka = 0.0528, Ks = 0.9495)

Pde6b ENSMUSG00000029491 (Mouse)

Gene Details

phosphodiesterase 6B, cGMP, rod receptor, beta polypeptide

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000031456, Mouse)

Protein Percentage 91.1%
CDS Percentage 85.56%
Ka/Ks Ratio 0.04694 (Ka = 0.0443, Ks = 0.9442)

Pde6b ENSRNOG00000000065 (Rat)

Gene Details

phosphodiesterase 6B, cGMP-specific, rod, beta (Pde6b), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000000077, Rat)

Protein Percentage 91.22%
CDS Percentage 85.48%
Ka/Ks Ratio 0.04537 (Ka = 0.0439, Ks = 0.9679)

Genome Location

Sequence Coding sequence

Length: 2565 bp    Location: 26413381..26372072   Strand: -
Raw sequence   
>XM_004847497.1
ATGAGCCTCAGGGAGGAGCAGGCGCATGGCTTCCTGGATGGAAACCCTGACTTCGCCCACCGGTACTTTGAGAAAAAGCTGAGCCCTGAGAATGTGGCTGCAGCCTGTGGGGACGGTTGCCCGGTGGGCTGCGGCAGCCTAAGGGAGCTGTGTCAGGTGGAGGAGAGCACGGTTCTGTTCGAGCTGGTGCAGGACATGCAGGAGAGCGTCAACATGGAGCGTGTGGTCTTCAAGATCCTGCGGCATCTCTGCACCCTCCTGCATGCTGACCGCTGCAGCCTCTTCATGTACCGCCAGCGCAATGGCATGGCTGAGCTTGCCACTCGGCTTTTCGGTGTGCAGCCAGACAGTGTCCTGGAAGACTGCCTGGTACCACCTGACTCTGAGATTGTCTTCCCCCTGGACATCGGAGTAGTTGGCCATGTGGCTCAGACCAAGAAGGTGATGAACGTACAGGACGTGACAGAGTGTCCCCACTTCAGCCCGTTCGCAGATGAGCTCACCAACTATGTGACGAGGAGCATCCTGGCCATGCCCATCGTGGACGGCAAAGATGTCGTGGCTGTGGCCATGGCGCTGAATAAGCTCAGCGACCCATGCTTCACAAGTGACGATGAAGACGTCTTCACAAAGTACCTGAATTTTGCCACATTAAACCTGAAGATCCATCACCTAAGCTACCTCCACAACTGTGAGACACGCCGAGGGCAGGTACTGCTCTGGTCAGCCAACAAGGTGTTTGAGGAGCTAACAGACATGGAGCGGCAGTTCCACAAGGCCTTCTACACCGTTCGGGCCTACCTGCACTGCGACCGGTGCTCTGTGGGCCTCCTGGACATGGCCAAGGAGAAGGAATTCTTCGATGTGTGGCCTGTGCTGATGGGAGAAACCCAGCCGTACTCAGGCCCACGCACACCCGATGGCCGGGAAATTCTCTTCTACAAAGTCATCGACTACATCCTCCACGGCAAGGAGGACATCAAGGTCATCCCCACACCCCCAGCCGACCACTGGGCCCTGGCCAGTGGCCTTCCAACCTACGTGGCAGAGAGTGGCTTTATCTGTAACATCATGAATGCCTCTGCTGATGAGATGTTCAAGTTCCAGGAGGGGCCACTGGATGACTCTGGCTGGGTCATCAGGAATGTGCTGTCCATGCCAATTGTCAACAAGAAGGAGGAGATAGTGGGAGTGGCCACCTTCTACAACAGGAAGGACGGGAAGCCCTTCGATGAGCAGGATGAGGTCCTCATGGAGTCCCTGACTCAGTTCCTGGGCTGGTCGGTGCTGAACACGGACACCTACGACAAAATGAACAAGCTAGAGAACCGCAAGGACATTGCACAGGACGTGGCTCTGTACCACGTGAGATGTGACAAGGACGAGATCCAGGCCATCCTGCCAACCAGGGAACGCCTGGGGAAGGAGCCAGCTGACTGCGAGGAGGAGGAGCTGGGGGAAATCCTGAAGGAAGAGCTGCCTGGGCCCACCAAGTTCAACATCTATGAGTTTCACTTCTCCGACCTGGAGTGCACCGAGATGGACCTGGTCAAATGCGGCATCCAGATGTACTATGAGCTGGGCGTGGTCCACAAGTTCCAGGTTCCCCAGGAGGTCCTGGTGCGGTTCCTGTACTCTGTCAGCAAAGCCTACAGGAGAGTCACCTACCACAACTGGAGGCACGGCTTCAACGTGGCCCAGACTATGTTCACCCTGCTCATGACAGGCAAGCTGAAAAACTACTACACGGACCTGGAAGCCTTTGCTATGGTTACAGCCGGGCTGTGCCATGACATCGATCACCGTGGCACCAACAACCTGTACCAGATGAAGTCCCAGAACCCCCTCGCCAAGCTTCACGGCTCCTCGATTTTGGAGCGGCACCACCTGGAGTTTGGAAAGTTCTTGTTGGCCGAAGAGACCCTGAACATCTACCAGAACCTGAACCGGCGGCAGCACGAGCACGTGATCCACCTCATGGACATCGCCATCATTGCCACTGACCTGGCCCTCTACTTCAAGAAGCGGACAATGTTCCAGAAGATTGTGGACGAGTCCAAGAACTACAAGGACAAGCAGAGCTGGGTGGAGTACCTCTCCCTGGAGACCACTCGGAAGGAGATTGTCATGGCCATGATGATGACGGCCTGTGACCTCTCCGCCATCACCAAGCCCTGGGAAGTACAGAGCAAGGTCGCACTTCTGGTGGCCGCTGAATTCTGGGAACAAGGTGATTTAGAGAGGACAGTCCTGGATCAGCAGCCCATTCCCATGATGGACCGGAACAAGGCGGCTGAGCTCCCCAAGCTGCAGGTTGGCTTCATCGACTTCGTGTGCACGTTCGTGTACAAGGAGTTCTCCCGCTTCCATGAGGAGATCCTGCCCATGTTCAACCGCCTACAGAACAACAGGAAGGAGTGGAAGGCACTGGCTGATGAGTACGAGGCAAAAGTGAGGGCCCTGGAGGAGGAGAAGAAGGAAGAGGATAGAACAACCAAGAAAGCGGGAATGGAAGTCTGCAATGGCAGCCCAACACCCAAGTCTTCAACCTGCTGCATCCTATGA

Related Sequences

XP_004847554.1 Protein

Pde6b PREDICTED: rod cGMP-specific 3',5'-cyclic phosphodiesterase subunit beta [Heterocephalus glaber]

Length: 854 aa      View alignments
>XP_004847554.1
MSLREEQAHGFLDGNPDFAHRYFEKKLSPENVAAACGDGCPVGCGSLRELCQVEESTVLFELVQDMQESVNMERVVFKILRHLCTLLHADRCSLFMYRQRNGMAELATRLFGVQPDSVLEDCLVPPDSEIVFPLDIGVVGHVAQTKKVMNVQDVTECPHFSPFADELTNYVTRSILAMPIVDGKDVVAVAMALNKLSDPCFTSDDEDVFTKYLNFATLNLKIHHLSYLHNCETRRGQVLLWSANKVFEELTDMERQFHKAFYTVRAYLHCDRCSVGLLDMAKEKEFFDVWPVLMGETQPYSGPRTPDGREILFYKVIDYILHGKEDIKVIPTPPADHWALASGLPTYVAESGFICNIMNASADEMFKFQEGPLDDSGWVIRNVLSMPIVNKKEEIVGVATFYNRKDGKPFDEQDEVLMESLTQFLGWSVLNTDTYDKMNKLENRKDIAQDVALYHVRCDKDEIQAILPTRERLGKEPADCEEEELGEILKEELPGPTKFNIYEFHFSDLECTEMDLVKCGIQMYYELGVVHKFQVPQEVLVRFLYSVSKAYRRVTYHNWRHGFNVAQTMFTLLMTGKLKNYYTDLEAFAMVTAGLCHDIDHRGTNNLYQMKSQNPLAKLHGSSILERHHLEFGKFLLAEETLNIYQNLNRRQHEHVIHLMDIAIIATDLALYFKKRTMFQKIVDESKNYKDKQSWVEYLSLETTRKEIVMAMMMTACDLSAITKPWEVQSKVALLVAAEFWEQGDLERTVLDQQPIPMMDRNKAAELPKLQVGFIDFVCTFVYKEFSRFHEEILPMFNRLQNNRKEWKALADEYEAKVRALEEEKKEEDRTTKKAGMEVCNGSPTPKSSTCCIL