Details from NCBI annotation

Gene Symbol Whsc1
Gene Name Wolf-Hirschhorn syndrome candidate 1, transcript variant X1
Entrez Gene ID 101709487

Database interlinks

Part of NW_004624755.1 (Scaffold)

For more information consult the page for NW_004624755.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

WHSC1 ENSCPOG00000007513 (Guinea pig)

Gene Details

Wolf-Hirschhorn syndrome candidate 1

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000006781, Guinea pig)

Protein Percentage 93.78%
CDS Percentage 91.58%
Ka/Ks Ratio 0.10798 (Ka = 0.0314, Ks = 0.2911)

WHSC1 ENSG00000109685 (Human)

Gene Details

Wolf-Hirschhorn syndrome candidate 1

External Links

Gene Match (Ensembl Protein ID: ENSP00000372351, Human)

Protein Percentage 89.82%
CDS Percentage 87.47%
Ka/Ks Ratio 0.10396 (Ka = 0.051, Ks = 0.4906)

Whsc1 ENSMUSG00000057406 (Mouse)

Gene Details

Wolf-Hirschhorn syndrome candidate 1 (human)

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000075210, Mouse)

Protein Percentage 89.89%
CDS Percentage 85.93%
Ka/Ks Ratio 0.08974 (Ka = 0.052, Ks = 0.58)

Whsc1 ENSRNOG00000038140 (Rat)

Gene Details

Wolf-Hirschhorn syndrome candidate 1 (Whsc1), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000021952, Rat)

Protein Percentage 89.22%
CDS Percentage 85.35%
Ka/Ks Ratio 0.09597 (Ka = 0.0579, Ks = 0.6029)

Genome Location

Sequence Coding sequence

Length: 4101 bp    Location: 25588205..25509301   Strand: -
>XM_004847401.1
ATGGAATTTAGTATCAAAAAAAGTTCTCTTTCTGTGCAAAAAGTTGTAAAGTGCATAAAGATGAAGCAGGCACCAGAAATCCTTGGCAATACAAATGGAAAGACTCAGAACTGTGAAATGAATCGCGACTGTTCTGTATTCCTCAGCAAAGCTCAGCTTTCTAACAGCCTACAGGAGGGGGTCATGCAGAAGTTTAATGGCCACGATGCACTTCCCTTTATTCCAGCAGAGAAGTTGAAGGATCTTACTTCCTGTGTGTTCAATGGAGAACCTGGTGCTCCCGATGCCAAATTGTGTTTTGAGTCCCAGGAAGGAAAAGGAATTGGGACACCGCCCAACACTACCCCTATCAAAAATGGCTCTCCAGAAATCAAGCTGAAAATCACCAAAACATACATGAATGGGAAACCTCTCTTTGAATCTTCTATCTGTGGTGACAGTGCTGCTGATGTGTCTCAGTCAGAAGAAGATGGGCCGAAGTCGGAGAGCAAGGTGCGGAGGAGCAGGAAAAGGAGCATAAAGTACGACTCCTTGCTGGAGCAGGGCCTTGTGGAAGCAGCTCTGGTGTCCAAGATCTCGAGTCCTGCAGATAAAAAGATTCCAGTTAAGAAAGAGTCCTGCCCAAACACTGGCAGAGACAAAGACCACCTGTTGAAATACAGCGTGGGTGACTTGGTGTGGTCCAAAGTGTCGGGTTACCCTTGGTGGCCTTGCATGGTTTCTGCCGATCCACTCCTTCACAACCACACCAAACTTAAAGGTCAGAAAAAGAGTGCACGCCAGTATCACGTCCAGTTCTTTGGTGATGCCCCAGAAAGAGCATGGATATTTGAGAAGAGCCTTGTGGCTTTTGAAGGAGAAGGCCAGTTTGAGAAGTTATGCCAGGAAAGTGCCAGGCAGGCACCCACGAAAGCTGAGAAAATCAAGCTGTTGAAACCTATTTCAGGGAAACTGAGGGCTCAGTGGGAGATGGGCATCATTCAGGCGGAGGAAGCTGCCAGCCTGTCTGTGGAAGAGCGGAAAGCCAAGTTCACCTTCCTCTATGTGGGGGACCAGCTGCACCTCAACCCCCAGGTAGCCAAGGAGGCCGGCATTGCTGCTGAGGGCTCTGGAGAAGTGGTGGAGCCTGCCGGGGTTGGGGAAGCAGCTGCTGCAGACCCTCAGGCTGCTCAGGAGGAGGGCATTCCCATGAAGAGGAGGCGGAGAGCCAAGCGGTCTAGCTCTGTCGAGAACCACGAGAGTGATGCCTGCGTGGAGAAGAGCACTCCACAAAAGCCCACCGAGGCCGAGCCCAAAAGAGGAGTCGGGTCTCCCCCTGGGAGGAAGAAGGCAGCAGCCTCCACTCCAAGGAGCCGGAAGGGAGGTGCGGCGTCTCAGTTTTTGGTCTTCTGTCAAAAGCACCGGGATGAGGTTGTTGCTGAGCACCCAGATGCATCAGGCGAGGAGATTGAAGAACTGCTGGGATCCCAGTGGAATATGCTCAATGAAAAACAGAAAGCTCGCTATAACACCAAGTTTGCCCTTGTGACCTCAGCCCCATCTGAAGAAGATCCCGGTAATGTAAATGGGAAAAAAAGAAATCATACAAAGAGGACAGAGGACCCTCCAGAAGATGTTGACATCGAGGATGCACCTAGAAAGAGACTCAGGACCGACAAGCATGGTCTTCGGAAGAGAGAGACAAGCACTGACAAGATGGCCAGGACAAGCTCTTACAAGGCCACGGAGGCGGCTGCCTCACTCAAGAGCCAGGCAGCAACAAAAAATCTGTCTGATGCGTGCAAACCACTGAAGAAGCGAAATCGGGCTTCTGCAGCAGCGTCTTCCACTCTTGGGTTTAGCAAAAGTTCATCTCCTTCTGCATCCTTAACTGAGAATGAGGTCTCAGACGGCCCAGGAGACGAGCCCTCGGAGTCCCCTTACGAAAGTGCGGATGAAACACAGACTGAAGTGTCCGTCTCGTCTAAAAGGTCTGAACGAGGAGTGGCCGCCAAAAAGGAGTATGTGTGCCAGCTGTGCGAGAAGACGGGAAGCCTCCTGCTGTGCGAAGGCCCTTGCTGCAGTGCATTCCACCTCGCCTGCCTCGGGCTTTCCAGGAGACCAGAGGGGAGGTTCACCTGCAGCCAGTGCACCTCAGGGATCCACGCGTGCTTTGTGTGCAAGGAGAGGAAGGCGGAGGTGAAGCGCTGTGTCGTGACCCAGTGTGGGAAATTCTACCACGACGCCTGTGTGAGAAGATACCCTCTCACTGTGTTTGAAAGCAGGGGCTTTCGCTGCCCCCTGCATAGCTGCGTGAGCTGCCACGCCTCAAACCCTTCAAACCCACGGCCCTCAAAAGGTAAAATGATGCGGTGCGTGCGCTGCCCCGTAGCATATCACGGAGGGGACGCATGTCTGGCAGCAGGCTGCTCGGTGATCGCTTCCCACAGCATCGTCTGCACGGCCCACTTCACTGCTCGGAAGGAGAAGCGGCACCACAGCCACGTGAATGTGAGCTGGTGCTTCGTGTGCTCTAAAGGGGGGAGCCTCCTGTGCTGCGAGGCCTGCCCGGCAGCCTTCCACCCCGACTGCCTGAACATCGACATGCCTGACGGCAGCTGGTTCTGCAACGACTGCAGGGCTGGGAAGAAGCTGCACTTCCAAGACATCATCTGGGTCAAACTCGGGAACTACAGATGGTGGCCGGCAGAAGTTTGCCATCCCAAAAATGTCCCCCCAAATATTCAGAAAATGAAGCACGAGATTGGAGAATTCCCTGTGTTTTTCTTTGGGTCTAAAGATTATTACTGGACGCATCAGGCACGAGTATTCCCGTACATGGAGGGGGACCGGGGCAGCCGCTACCATGGGGTCAGAGGGATCGGAAGAGTCTTCAAAAACGCACTGCAAGAAGCTGAAGCTCGTTTTCGTGAAGTCAAACTTCAGAGGGAAGCCCGAGAAACACAGGAGAGCGAGCGCAGGCCCCCACCCTACAAGCACATCAAGGTCAATAAGCCTTACGGGAAAGTTCAGATCTACACGGCCGATATCTCGGAAATCCCAAAGTGTAATTGTAAGCCCACAGACGAGAATCCCTGTGGCTTTGACTCAGAATGTTTGAACAGGATGCTGATGTTCGAGTGCCACCCGCAGGTGTGTCCCGCGGGCGAGTACTGCCAGAACCAGTGCTTCACCAAGCGCCAGTACCCAGAGACCAAGATCATCAAGACAGATGGCAAAGGGTGGGGCCTGGTTGCCAAGCGAGACATCAGAAAGGGAGAGTTTGTGAATGAGTATGTCGGTGAGCTGATTGATGAGGAGGAGTGTATGGCAAGGATCAAGTACGCACACGAGAACGACATCACGCACTTTTACATGCTCACCATAGACAAGGACCGTATAATCGACGCTGGGCCCAAAGGAAACTATTCCCGGTTTATGAACCACAGCTGCCAGCCCAACTGTGAGACCCTCAAGTGGACAGTGAATGGGGACACCCGCGTAGGCCTGTTTGCTGTGTGTGACATTCCTGCAGGGACAGAGCTGACTTTTAATTATAACCTCGACTGTTTGGGCAATGAGAAAACAGTCTGTCGGTGCGGAGCCTCCAACTGCAGTGGATTTCTTGGGGACAGACCAAAGACCTCAGCATCCCTTTCTTCAGAGGAAAAGGGTAAAAAGACCAAGAAGAAAACCAGGAGGCGCAGAGCCAAGGGGGAGTGGAAGAGGCAGTCGGAGGATGAGTGTTTCCGCTGTGGTGACGGTGGGCAGCTGGTGCTGTGCGACCGCAAGCTCTGCACCAAGGCTTACCACCTGTCCTGCCTGGGCCTGGGCAAGCGGCCCTTCGGGAAGTGGGAGTGTCCGTGGCATCACTGCGATGTGTGTGGCAAACCTTCCATGTCGTTCTGCCACCTCTGCCCAAATTCGCTGTGTAAGGAGCACCAGGACGGGGCATCATTCCGCACTGCGCAGGACGGGCAGACCTACTGCTGCGAGCATGACTTGGGGGCACAGGCAGGGCTGCGCAGTGGCAAGGCCGAGAAGCCCCTTCCAGAGCCGGTGAAGTCCAAGGGGAAGAGGAGGAAAAGGCGGTGCTGGCGGCGGGTCACGGAGGGGAAATAG

Related Sequences

XP_004847458.1 Protein

Whsc1 PREDICTED: histone-lysine N-methyltransferase NSD2 isoform X1 [Heterocephalus glaber]

Length: 1366 aa      View alignments
>XP_004847458.1
MEFSIKKSSLSVQKVVKCIKMKQAPEILGNTNGKTQNCEMNRDCSVFLSKAQLSNSLQEGVMQKFNGHDALPFIPAEKLKDLTSCVFNGEPGAPDAKLCFESQEGKGIGTPPNTTPIKNGSPEIKLKITKTYMNGKPLFESSICGDSAADVSQSEEDGPKSESKVRRSRKRSIKYDSLLEQGLVEAALVSKISSPADKKIPVKKESCPNTGRDKDHLLKYSVGDLVWSKVSGYPWWPCMVSADPLLHNHTKLKGQKKSARQYHVQFFGDAPERAWIFEKSLVAFEGEGQFEKLCQESARQAPTKAEKIKLLKPISGKLRAQWEMGIIQAEEAASLSVEERKAKFTFLYVGDQLHLNPQVAKEAGIAAEGSGEVVEPAGVGEAAAADPQAAQEEGIPMKRRRRAKRSSSVENHESDACVEKSTPQKPTEAEPKRGVGSPPGRKKAAASTPRSRKGGAASQFLVFCQKHRDEVVAEHPDASGEEIEELLGSQWNMLNEKQKARYNTKFALVTSAPSEEDPGNVNGKKRNHTKRTEDPPEDVDIEDAPRKRLRTDKHGLRKRETSTDKMARTSSYKATEAAASLKSQAATKNLSDACKPLKKRNRASAAASSTLGFSKSSSPSASLTENEVSDGPGDEPSESPYESADETQTEVSVSSKRSERGVAAKKEYVCQLCEKTGSLLLCEGPCCSAFHLACLGLSRRPEGRFTCSQCTSGIHACFVCKERKAEVKRCVVTQCGKFYHDACVRRYPLTVFESRGFRCPLHSCVSCHASNPSNPRPSKGKMMRCVRCPVAYHGGDACLAAGCSVIASHSIVCTAHFTARKEKRHHSHVNVSWCFVCSKGGSLLCCEACPAAFHPDCLNIDMPDGSWFCNDCRAGKKLHFQDIIWVKLGNYRWWPAEVCHPKNVPPNIQKMKHEIGEFPVFFFGSKDYYWTHQARVFPYMEGDRGSRYHGVRGIGRVFKNALQEAEARFREVKLQREARETQESERRPPPYKHIKVNKPYGKVQIYTADISEIPKCNCKPTDENPCGFDSECLNRMLMFECHPQVCPAGEYCQNQCFTKRQYPETKIIKTDGKGWGLVAKRDIRKGEFVNEYVGELIDEEECMARIKYAHENDITHFYMLTIDKDRIIDAGPKGNYSRFMNHSCQPNCETLKWTVNGDTRVGLFAVCDIPAGTELTFNYNLDCLGNEKTVCRCGASNCSGFLGDRPKTSASLSSEEKGKKTKKKTRRRRAKGEWKRQSEDECFRCGDGGQLVLCDRKLCTKAYHLSCLGLGKRPFGKWECPWHHCDVCGKPSMSFCHLCPNSLCKEHQDGASFRTAQDGQTYCCEHDLGAQAGLRSGKAEKPLPEPVKSKGKRRKRRCWRRVTEGK