Details from NCBI annotation

Gene Symbol Msx1
Gene Name msh homeobox 1
Entrez Gene ID 101706838

Database interlinks

Part of NW_004624755.1 (Scaffold)

For more information consult the page for NW_004624755.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

MSX1 ENSCPOG00000005514 (Guinea pig)

Gene Details

msh homeobox 1

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000004967, Guinea pig)

Protein Percentage 96.42%
CDS Percentage 92.11%
Ka/Ks Ratio 0.03981 (Ka = 0.0158, Ks = 0.3977)

MSX1 ENSG00000163132 (Human)

Gene Details

msh homeobox 1

External Links

Gene Match (Ensembl Protein ID: ENSP00000372170, Human)

Protein Percentage 93.4%
CDS Percentage 89.77%
Ka/Ks Ratio 0.04996 (Ka = 0.0305, Ks = 0.6097)

Msx1 ENSMUSG00000048450 (Mouse)

Gene Details

homeobox, msh-like 1

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000058354, Mouse)

Protein Percentage 92.41%
CDS Percentage 88.23%
Ka/Ks Ratio 0.05864 (Ka = 0.0351, Ks = 0.5989)

Msx1 ENSRNOG00000006876 (Rat)

Gene Details

msh homeobox 1 (Msx1), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000009101, Rat)

Protein Percentage 92.93%
CDS Percentage 87.99%
Ka/Ks Ratio 0.04575 (Ka = 0.0319, Ks = 0.6972)

Genome Location

Sequence Coding sequence

Length: 918 bp    Location: 21857461..21861021   Strand: +
>XM_004847303.1
ATGGCCCCGGCTGCTGATATGACTTCTCTGCCGCTCGGTGTCAAAGTGGAGGACTCCGCCTTCGCCAAGCCGGCCGGGGGAGGCGCGGGCCAGGGCCCCGCCGCCACCACGGCCACGGCCGCGGCCGCCGCCATGGGCGCCGAGGAGGAGGGGGCCAAGCCCAAAGCGCCCCCGTCGCTCCTGCCCTTCAGCGTGGAGGCGCTGATGGCCGATCACAGGAAGCCTGGGGCCAAGGAGAGCGCGCTGGCGGCCCCCGAGGGTGCGCAGGCGGCGGGCGGCTCGGTGCAGCCCCTGGGCGCCCGGGCCGGCTCCCTGGGCACCGCGGACGCACCCTCCCCGCCCCGTCCGCTCGGCCGTTTCTCAGTGGGAGGACTCCTCAAGCTGCCGGAAGATGCGCTGGTCAAGGCCGAGAGCCCCGAGAAGCCGGAGAGGACCCCGTGGATGCAGAGCCCCCGCTTCTCCCCGCCCCCCGCCAGGCGGCTGAGTCCCCCGGCCTGCACCCTTCGCAAGCACAAGACCAACCGCAAGCCGAGGACGCCTTTCACCACTGCCCAGCTGCTGGCTCTGGAGCGCAAGTTCCGCCAGAAGCAGTACCTGTCCATTGCAGAGCGCGCTGAGTTCTCCAGCTCCCTCAGCCTCACGGAGACCCAGGTGAAGATCTGGTTCCAGAACCGCCGCGCCAAGGCCAAGAGACTGCAGGAGGCCGAGCTGGAGAAACTGAAGATGGCAGCCAAGCCCATGCTGCCCCCGGCTGCCTTCGGCCTCTCCTTCCCCCTTGGTGGTCCAGCGGCTGTCGCTGCAGCGGCGGGCGCCTCGCTCTACAGTGCCTCTGGCCCCTTCCAGCGTGCTGCGCTCCCAGTGGCGCCCGTGGGACTCTACACGGCCCATGTAGGGTACAGCATGTACCATCTGACATAG

Related Sequences

XP_004847360.1 Protein

Msx1 PREDICTED: homeobox protein MSX-1 [Heterocephalus glaber]

Length: 305 aa      View alignments
>XP_004847360.1
MAPAADMTSLPLGVKVEDSAFAKPAGGGAGQGPAATTATAAAAAMGAEEEGAKPKAPPSLLPFSVEALMADHRKPGAKESALAAPEGAQAAGGSVQPLGARAGSLGTADAPSPPRPLGRFSVGGLLKLPEDALVKAESPEKPERTPWMQSPRFSPPPARRLSPPACTLRKHKTNRKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKRLQEAELEKLKMAAKPMLPPAAFGLSFPLGGPAAVAAAAGASLYSASGPFQRAALPVAPVGLYTAHVGYSMYHLT