Sequence details NCBI ID: XM_004847198.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Sepsecs
Gene Name Sep (O-phosphoserine) tRNA:Sec (selenocysteine) tRNA synthase, transcript variant X1
Entrez Gene ID 101700995

Database interlinks

Part of NW_004624755.1 (Scaffold)

For more information consult the page for NW_004624755.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

SEPSECS ENSCPOG00000000323 (Guinea pig)

Gene Details

Sep (O-phosphoserine) tRNA:Sec (selenocysteine) tRNA synthase

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000000281, Guinea pig)

Protein Percentage 91.82%
CDS Percentage 91.62%
Ka/Ks Ratio 0.18848 (Ka = 0.0434, Ks = 0.2302)

SEPSECS ENSG00000109618 (Human)

Gene Details

Sep (O-phosphoserine) tRNA:Sec (selenocysteine) tRNA synthase

External Links

Gene Match (Ensembl Protein ID: ENSP00000371535, Human)

Protein Percentage 91.62%
CDS Percentage 90.75%
Ka/Ks Ratio 0.15211 (Ka = 0.0427, Ks = 0.2808)

Sepsecs ENSMUSG00000029173 (Mouse)

Gene Details

Sep (O-phosphoserine) tRNA:Sec (selenocysteine) tRNA synthase

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000031069, Mouse)

Protein Percentage 86.11%
CDS Percentage 85.05%
Ka/Ks Ratio 0.15963 (Ka = 0.0785, Ks = 0.4919)

Sepsecs ENSRNOG00000049244 (Rat)

Gene Details

Sep (O-phosphoserine) tRNA:Sec (selenocysteine) tRNA synthase (Sepsecs), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000065651, Rat)

Protein Percentage 85.32%
CDS Percentage 84.99%
Ka/Ks Ratio 0.17359 (Ka = 0.0828, Ks = 0.477)

Genome Location

Sequence Coding sequence

Length: 1518 bp    Location: 7211584..7253248   Strand: +
Raw sequence   
>XM_004847198.1
ATGAACCGCTACACCTTCGCGGCGGGCGAGCGGCTGGTGTCGCCAGCTTACGTGCGACAGGGCTGTGAGGCCCGCCGCACGCATGAGCACCTCGTACTGCAACTTCTGGAGAAGGGCAAGTGTCCAGAGGATGGTTGGGATGAAAGTACGCTTGAGCTCTTTTTACATGAACTTGCAATCATGGATAGCAACAATTTCTTGGGCAATTGTGGTGTGGGAGAAAGGGAAGGGAGAGTGGCATCTGCATTAGTTGCTCGACGTCATTACAGGCTCATTCATGGCATTGGACGGTCTGGTGATATTTCTGCTGTGCAGCCGAAAGCCGCAGGCTCGAGCCTTTTGAACAAAATTACCAATTCTTTGGTCCTGGACATCATAAAGTTGGCTGGTGTTCCTGCAGTGGCAAATTGCTTTGTAGTTCCTATGGCGACTGGTATGAGTCTAACCCTGTGTTTTTTAACGTTAAGACACAAAAGACCAAAAGCAAAGTATATCATATGGCCACGAATAGACCAGAAGTCCTGCTTTAAATCCATGATCACTGCAGGTTTTGAACCCGTGGTGATAGAAAACTTTTTAGAAGGGGATGAGCTGCGCACAGATCTGAAAGCAGTGGAGGCCAAAGTTCAGGAACTGGGGCCTGACTCCATTCTGTGTGTTCACTCTACTACATCCTGCATCGCTCCACGAGTGCCTGATAAAATAGAAGAACTGGCTGTGATTTGTGCTAATTATGGCATTCCACATATAGTCAACAATGCTTACGGAGTACAGTCTTCAAAGTGCATGCACCTCATTCAGCAGGGGGCTCGAGTTGGTAGAATAGATGCTTTTGTTCAGAGTTTGGACAAAAATTTTATGGTTCCAGTAGGTGGCGCTATAATTGCTGGCTTTAATGATTCCTTCATTCAGGAAATCAGCAAAATGTATCCAGGAAGAGCATCGGCCTCCCCTTCTTTAGATGTCCTTATTACCTTGCTATCACTTGGATCAAATGGTTATAAGAAACTGTTAAAAGAAAGAAAGGAAATGTTTTCATATTTGTCTGACCAACTAAAGAAATTGTCGGAAGCCTACTGTGAAAGACTGTTGCAGACACCTCACAATCCCATATCATTAGCTGTGACACTTAAGACACTAGATGCACAGCATGACAAAGCTGTCACTCAGCTTGGCTCAATGCTTTTTACCAGACAGGTTTCTGGTGCCAGGGTTGTGCCTCTTGGGTTTGTGCAAACTATGAGTGGCCACACTTTTAGAGGCTTCATGTCCCATGCAAACGACTACCCCTGTGCTTACCTCAACGCTGCAGCAGCTATCGGAATGAAGACGCAGGATGTAGACTTGTTCATAAAGAGACTTGACAAGTGTTTAAAGACAGTAAGAAAAGAACAAAATAAAGAGAGTGACGTACCTGGAGTTGACAAAAACAATAAAACTGAAAATGTGGATATTGAAGAAATGGCTTTAAAACTAGATAATGTGCTTCTTGACACATACCAAGATACTTCTTCATGA

Related Sequences

XP_004847255.1 Protein

Sepsecs PREDICTED: O-phosphoseryl-tRNA(Sec) selenium transferase isoform X1 [Heterocephalus glaber]

Length: 505 aa      View alignments
>XP_004847255.1
MNRYTFAAGERLVSPAYVRQGCEARRTHEHLVLQLLEKGKCPEDGWDESTLELFLHELAIMDSNNFLGNCGVGEREGRVASALVARRHYRLIHGIGRSGDISAVQPKAAGSSLLNKITNSLVLDIIKLAGVPAVANCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFKSMITAGFEPVVIENFLEGDELRTDLKAVEAKVQELGPDSILCVHSTTSCIAPRVPDKIEELAVICANYGIPHIVNNAYGVQSSKCMHLIQQGARVGRIDAFVQSLDKNFMVPVGGAIIAGFNDSFIQEISKMYPGRASASPSLDVLITLLSLGSNGYKKLLKERKEMFSYLSDQLKKLSEAYCERLLQTPHNPISLAVTLKTLDAQHDKAVTQLGSMLFTRQVSGARVVPLGFVQTMSGHTFRGFMSHANDYPCAYLNAAAAIGMKTQDVDLFIKRLDKCLKTVRKEQNKESDVPGVDKNNKTENVDIEEMALKLDNVLLDTYQDTSS