Details from NCBI annotation

Gene Symbol Pcdh7
Gene Name protocadherin 7, transcript variant X5
Entrez Gene ID 101720061

Database interlinks

Part of NW_004624755.1 (Scaffold)

For more information consult the page for NW_004624755.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

PCDH7 ENSCPOG00000009659 (Guinea pig)

Gene Details

protocadherin 7

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000008671, Guinea pig)

Protein Percentage 97.72%
CDS Percentage 94.19%
Ka/Ks Ratio 0.04152 (Ka = 0.0112, Ks = 0.2708)

PCDH7 ENSG00000169851 (Human)

Gene Details

protocadherin 7

External Links

Gene Match (Ensembl Protein ID: ENSP00000441802, Human)

Protein Percentage 96.9%
CDS Percentage 92.63%
Ka/Ks Ratio 0.04573 (Ka = 0.0163, Ks = 0.3557)

Pcdh7 ENSMUSG00000029108 (Mouse)

Gene Details

protocadherin 7

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000092376, Mouse)

Protein Percentage 96.9%
CDS Percentage 89.84%
Ka/Ks Ratio 0.0295 (Ka = 0.0155, Ks = 0.5247)

PCDH7 ENSRNOG00000012367 (Rat)

Gene Details

protocadherin-7 precursor

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000045705, Rat)

Protein Percentage 96.61%
CDS Percentage 89.71%
Ka/Ks Ratio 0.03087 (Ka = 0.0167, Ks = 0.5395)

Genome Location

Sequence Coding sequence

Length: 3192 bp    Location: 1986195..1579166   Strand: -
>XM_004847175.1
ATGCTGAGGATGCGGACGGCGGGATGGGCGCGCGGCTGGTGCTTGGGCTGCTGCCTCCTCCTGCCGCTCTGGCTCAGCCTGGCTGCCGCTAAGCAGCTACTCCGGTACCGGCTGGCCGAGGAGGGCCCCGCCGACGTCCGGATCGGCAACGTCGCCTCGGACCTGGGCATCGTGACCGGCTCCGGTGAGGTGACTTTCAGCCTAGAGTCAGGCTCCGAGTACCTGAAAATTGACAACCTCACCGGCGAGCTGAGCACCAGCGAGCGGCGCATCGACCGCGAGAAGCTACCCCAGTGTCAGATGATCTTCGACGAGAACGAGTGCTTCCTGGACTTCGAGGTGTCGGTGATCGGGCCCTCGCAGAGCTGGGTGGACCTGTTTGAGGGTCGGGTCATCGTGCTGGACATCAACGACAACACGCCCACCTTCCCGTCGCCCGTGCTCACGCTCACGGTGGAGGAGAACCGGCCGGTGGGGACGCTGTACCTGCTGCCCACCGCCACCGACCGTGACTTCGGCCGCAACGGCATCGAGCGCTACGAGCTGCTCCAGGAGCCCGGGGGCGGCGGCGGAGAGGGCCGGCGCTCCGTGCTGGCCGACAGCGCCCCCTACCCTGGGGGCGGCGGGAACGGCGCGAGCGGCGGCGGCCAGGGAGGCTCCAAGCGGCGGCCGGACGCGCAGGAGGGCGGCGGCGGCACCAGCCCCGGCGGTCGCAGCAGCGTGTTCGAGCTGCAGGTGGCGGACACCCCGGACGGCGAGAAGCAGCCGCAGCTGATCGTGAAGGGGGCGCTGGACCGGGAGCAGCGTGACTCCTACGAGCTGACCCTGCGGGTGCGCGACGGCGGCGACCCCCCTCGGTCCTCGCAGGCCATCTTGCGGGTGCTCATCACCGACGTGAACGACAACAGCCCCCGCTTCGAGAAAAGCGTCTACGAGGCTGACCTGGCCGAGAACAGCGCCCCGGGGACCCCCATCCTGCAGCTGCGCGCCGCCGACTTGGACGTGGGGGTCAATGGGCAGATTGAGTACGTGTTCGGGGCGGCCACTGAGTCCGTGAGGCGGCTCCTGCGCCTCGACGAAACGTCCGGCTGGCTCAGTGTCTTGCACCGCATAGACCGCGAGGAAGTGAACCAGCTGCGCTTCACAGTCATGGCGCGCGACCGCGGGCAGCCCCCCAAGACCGACAAGGCCACTGTGGTCCTCAACATCAAGGACGAGAACGACAACGTGCCGTCCATTGAAATCCGCAAGATCGGGCGCATCCCACTGAAGGACGGGGTGGCCAACGTGGCCGAGGACGTGCTGGTCGACACCCCCATCGCCCTGGTGCAGGTGTCCGACCGAGACCAAGGGGAGAACGGCGTAGTCACCTGCACCGTAGTGGGCGATGTCCCCTTCCAACTCAAGCCGGCCAGCGACACAGAGGGCGACCAGAACAAGAAAAAGTACTTCCTGCACACATCGGCTCCTCTGGACTATGAGAGCGCGCGGGAGTTCAACGTGGTCATCGTGGCGGTAGACTCCGGCAGCCCCAGCCTTTCCAGCAACAACTCCTTAGTCGTCAAAGTGGGGGACACTAACGACAACCCTCCCGTCTTTGGCCAGTCAGTGGTGGAGGTTTACTTCCCGGAGAACAACATCCCTGGCCAGAGGGTCGCTACCGTGCTGGCGACAGACGCTGACAGCGGGAAAAACGCAGAGATCGCTTACTCGCTGGACTCTGCCTTGATGGGGATCTTTGCTATTGACCCTGATTCCGGGGACATCCTTGTAAATACGGTGCTGGACCGCGAGCAGACCGACAGGTACGAGTTTAAAGTTAATGCCAAAGACAAAGGCATCCCTGTGCTCCAGGGCAGCACCACAGTAATTGTGCAGGTGGCCGACAAGAATGACAATGACCCTAAGTTTATGCAGGACATTTTTACCTTTTATGTGAAAGAGAACTTGCAGCCCAACAGCCCCGTGGGAATGGTCACCGTGATGGATTCTGACAAAGGGCGGAATGCAGAGATGAGCCTCTATATAGAGGAGAACAGCAACATTTTTTCTATTGAAAATGACACGGGGACCATTTACTCCACGATGTCTTTTGACCGGGAACATCAGACCACATACACGTTCAGAGTCAAGGCTGTGGATGGTGGTGATCCTCCCAGATCTGCCACAGCCACAGTCTCTCTCTTTGTGATGGATGAAAATGACAACGCTCCCACAGTTACCCTTCCCAGAAACGTCTCTTACACCTTGCTGCCACCTTCGAGTAATGTCAGGACAGTTGTAGCTACAGTCTTGGCGACAGACAGCGATGATGGCATCAATGCAGACCTGAACTACAGCATTGTGGGAGGGAATCCCTTCAAGCTGTTTGACATTGATCCCACCAGTGGTGTGGTTTCTTTAGTGGGAAAACTCACCCATAAGCATTACGGCTTGCACAGGTTGGTGGTACAAGTGAATGACAGTGGGCAACCTTCCCAGTCCACCACTGCTCTGGTGCATGTGTTTGTCAATGAAAGTGTTTCGAATGCAACTGTGATTGACTCCCAGATAGCCAGAAGTTTACATACCCCACTAACCCAGGATATTGCTGGTGACCCGAGCTATGAAATTAGCAAACAGAGACTCAGTATTGTCATCGGAGTGGTTGCTGGCATCATGACAGTGATTCTGATCATTTTAATTGTTGTGATGGCAAGGTACTGCAGGTCCAAAAACAAAAATGGCTATGAAGCTGGCAAAAAAGATCACGAAGACTTTTTTACACCCCAACAGCATGACAAATCTAAAAAGCCTAAAAAGGACAAGAAAAACAAAAAATCTAAGCAGCCACTCTACAGCAGCATTGTCACTGTAGAAGCTTCTAAACCAAATGGACAGAGGTATGACAGTGTCAACGAGAAGCTGTCAGACAGCCCAAGCATGGGGCGATACCGATCTGTTAATGGTGGGCCTGGCAGTCCTGACCTGGCAAGGCATTACAAATCCAGTTCCCCACTGCCTACTGTCCAGCTTCACCCCCAGTCACCAACTGCAGGAAAAAAACACCAGGCTGTACAAGATCTACCACCAGCCAACACATTTGTGGGAACAGGAGACAACATTTCAATTGGATCAGATCACTGCTCTGAGTACAGCTGTCAAACCAATAACAAGTACAGCAAACAGATTCAAGGCCTCTTCCAGATGTAG

Related Sequences

XP_004847232.1 Protein

Pcdh7 PREDICTED: protocadherin-7-like isoform X5 [Heterocephalus glaber]

Length: 1063 aa      View alignments
>XP_004847232.1
MLRMRTAGWARGWCLGCCLLLPLWLSLAAAKQLLRYRLAEEGPADVRIGNVASDLGIVTGSGEVTFSLESGSEYLKIDNLTGELSTSERRIDREKLPQCQMIFDENECFLDFEVSVIGPSQSWVDLFEGRVIVLDINDNTPTFPSPVLTLTVEENRPVGTLYLLPTATDRDFGRNGIERYELLQEPGGGGGEGRRSVLADSAPYPGGGGNGASGGGQGGSKRRPDAQEGGGGTSPGGRSSVFELQVADTPDGEKQPQLIVKGALDREQRDSYELTLRVRDGGDPPRSSQAILRVLITDVNDNSPRFEKSVYEADLAENSAPGTPILQLRAADLDVGVNGQIEYVFGAATESVRRLLRLDETSGWLSVLHRIDREEVNQLRFTVMARDRGQPPKTDKATVVLNIKDENDNVPSIEIRKIGRIPLKDGVANVAEDVLVDTPIALVQVSDRDQGENGVVTCTVVGDVPFQLKPASDTEGDQNKKKYFLHTSAPLDYESAREFNVVIVAVDSGSPSLSSNNSLVVKVGDTNDNPPVFGQSVVEVYFPENNIPGQRVATVLATDADSGKNAEIAYSLDSALMGIFAIDPDSGDILVNTVLDREQTDRYEFKVNAKDKGIPVLQGSTTVIVQVADKNDNDPKFMQDIFTFYVKENLQPNSPVGMVTVMDSDKGRNAEMSLYIEENSNIFSIENDTGTIYSTMSFDREHQTTYTFRVKAVDGGDPPRSATATVSLFVMDENDNAPTVTLPRNVSYTLLPPSSNVRTVVATVLATDSDDGINADLNYSIVGGNPFKLFDIDPTSGVVSLVGKLTHKHYGLHRLVVQVNDSGQPSQSTTALVHVFVNESVSNATVIDSQIARSLHTPLTQDIAGDPSYEISKQRLSIVIGVVAGIMTVILIILIVVMARYCRSKNKNGYEAGKKDHEDFFTPQQHDKSKKPKKDKKNKKSKQPLYSSIVTVEASKPNGQRYDSVNEKLSDSPSMGRYRSVNGGPGSPDLARHYKSSSPLPTVQLHPQSPTAGKKHQAVQDLPPANTFVGTGDNISIGSDHCSEYSCQTNNKYSKQIQGLFQM