Details from NCBI annotation

Gene Symbol Abcf1
Gene Name ATP-binding cassette, sub-family F (GCN20), member 1, transcript variant X3
Entrez Gene ID 101709485

Database interlinks

Part of NW_004624754.1 (Scaffold)

For more information consult the page for NW_004624754.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

ABCF1 ENSCPOG00000021623 (Guinea pig)

Gene Details

ATP-binding cassette, sub-family F (GCN20), member 1

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000020125, Guinea pig)

Protein Percentage 76.2%
CDS Percentage 76.78%
Ka/Ks Ratio 0.16439 (Ka = 0.1813, Ks = 1.1027)

ABCF1 ENSG00000204574 (Human)

Gene Details

ATP-binding cassette, sub-family F (GCN20), member 1

External Links

Gene Match (Ensembl Protein ID: ENSP00000313603, Human)

Protein Percentage 79.5%
CDS Percentage 77.63%
Ka/Ks Ratio 0.16048 (Ka = 0.1559, Ks = 0.9713)

Abcf1 ENSMUSG00000038762 (Mouse)

Gene Details

ATP-binding cassette, sub-family F (GCN20), member 1

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000036881, Mouse)

Protein Percentage 76.57%
CDS Percentage 75.44%
Ka/Ks Ratio 0.14649 (Ka = 0.1772, Ks = 1.2094)

Abcf1 ENSRNOG00000000799 (Rat)

Gene Details

ATP-binding cassette, subfamily F (GCN20), member 1 (Abcf1), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000001049, Rat)

Protein Percentage 76.31%
CDS Percentage 75.17%
Ka/Ks Ratio 0.14173 (Ka = 0.1784, Ks = 1.2586)

Genome Location

Sequence Coding sequence

Length: 2514 bp    Location: 25110076..25098239   Strand: -
>XM_004847093.1
ATGGAGCGCCTCAAGAAGCTGTCTGTCCCGGCCAGTGACGAGGAGGACGGGGGTGAGTGGCAGGGGCCCGGGCGCCCCCCGCGCTGCAGGGGGAGCCTCCTCTCACCTGCCTGCCCACCCCTTGTCGCCTCAGTGCCCGCCCCGACGCCCCGCGGAGGAAAGAAGGCCAAGGGCGGCAATGCTTTTGCAGCCCTGATTCAAGATCAGAGTGAGGAGGAGGAGGAGGAAGAGGAAGAAAAACACCCTCCTAAGCCTGCCAAGCCGGAGAAAGATCGTATCAACAAGGCTGTGTCTGAGGAGCAGCAGCCTGGGCTCAGGAGCAAAAAGGGAAAGGAAGAGAAGGCCAGAGGGAAGGCCAAGCCTCAAAACAAATTTGCTGCCCTGGACGATGAAGAGGAAGATGGAGAAGATGAGGAAGACATACGGAAAGAAGAGGAGCCTCCCACGCAAGGGAAGGCGAGGGCAGAGCAGGGTTCCGAGGAAGGAGGAGGAGAGGCGGTTGACTCTAAGGCAGAGGATCCCTTGGCTCACCTTAGCAAAAAGGAGAAGAAAAAGCTGAAGAAACAGATGGATTATGAGCGCCAGGTGGCGTCATTAAAAGCAGCTAATGCCGCCGAAAATGATTTCTCCGTGTCCCAGGCAGAGGTGTCCTCGCGCCAGGCCATGCTAGAAAACGCTTCTGACATCAAGCTAGAGAAGTTCAGCATCTCAGCCCATGGCAAGGAGCTGTTTGTCAACGCTGATCTCTTCATTGTAGCTGGCCGTCGCTACGGGCTGGTGGGACCCAACGGCAAGGGCAAGACCACGCTTCTCAAGCACATCGCCAACCGCGCCCTGAGCATCCCTCCCAACATTGATGTACTGCTGTGCGAGCAGGGTGAGGCTGGGCCTGGGCCTGGGACGGGTGGGTGCTGGAGAGAGGCAGGAAGCAGGGATACGGGGCTTGAGAGGCACCGTGCTGGGCAGGGTCATCTGCCGGAAGTGGGCCTGAGGGACGTAAGGGGGTCGCTGGCCGGGAGTGGCCTGATTGCTCTCCTGCTCCCAGAGGTGGTAGCGGATGAGACACCGGCCGTACAGGCCGTCCTTCGAGCTGACACCAAGCGGTTGAAGCTGCTGGAGGAGGAGCGCCGGCTGCAGGGGCAGCTGGAGCAGGGGGACGACACAGCTGCCGAGAAGCTGGAGAAGGTGTACGAGGAATTGCGGGCCACAGGGGCAGCGGCTGCAGAGGCCAAAGCGCGGCGGATCCTGGCTGGCCTGGGCTTTGACCCTGAGATGCAGAATCGGCCCACACAGAAGTTCTCAGGGGGCTGGCGCATGCGTGTCTCCCTGGCCAGAGCGCTCTTCATGGAGCCCACGCTGCTGATGCTGGATGAGCCCACCAACCACCTGGACCTCAACGCCGTCATCTGGCTGAACAACTACCTTCAGGGCTGGCGGAAGACGCTGCTGATCGTCTCCCACGACCAGGGCTTCCTGGATGATGTGTGCACGGATATCATCCATCTGGATGCCCAGCGGCTGCACTACTACAGGGGCAATTACATGACCTTTAAGAAGATGTACCAGCAGAAGCAGAAGGAGCTGCTGAAGCAGTACGAGAAGCAGGAGAAGAAGCTGAAGGAGCTGAAGGCTGGTGGCAAGTCCACCAAGCAGGCCGAAAAGCAGACAAAGGAAGCCCTGACACGCAAGCAGCAGAAGTGCCGGCGGAAGAACCAGGATGAAGAGGCCCAGGAGGCGCCCGAGCTGCTGAAGCGGCCCCGGGAGTACACTGTGCGCTTTACCTTCCCCGACCCCCCGCCGCTCAGCCCGCCGTTGCTGGGCCTGCACGGCGTGACATTTGGCTACGAAGGGCAGAAACCACTCTTCAAGAACCTGGACTTCGGCATTGACATGGAGTCAAGGATCTGCATCGTGGGCCCTAATGGCGTGGGGAAGAGCACACTGCTGCTGCTGCTGACTGGCAAGCTGACTCCGACCCGAGGGGAAATGAGAAAGAACCACCGGCTGAAAATCGGCTTCTTCAACCAGCAGTACGCAGAGCAGCTGCGCCTGGAGGAGACGGCCACCGAGTATCTGCAGCGGGGCTTCAACCTGCCCTACCAGGAGGCCCGCAAGTGCCTGGGCCGCTTCGGCCTCGAGAGCCACGCGCACACCATCCAGATCTGCAAGCTCTCGGGTATGGTGGGGGGCAGGAGGGCGCCCACTTGCTCTGCGTGCGAGTGCGTGGCGGGTGTGGCAGAGCCCCTCTCCCTGCTGCAGGTGGGCAGAAGGCCCGGGTTGTGTTCGCAGAGCTGGCCTGTCGGGAGCCCGACGTCCTCATCCTGGACGAGCCGACCAACAACTTGGACATCGAGTCCATCGATGCCCTGGGGGAGGCCATCAACGAGTACAAGGGCGGTAAGGAGCACCTGGGAGGGGACTGCACTGCAGCGCCCATGGGCGGAAGCTCCCTCTTCATGTCCTGATCCTCTTCCTCCTCTCTTTCTTCAAAGCCGTAATCATCGTGAGCCATGA

Related Sequences

XP_004847150.1 Protein

Abcf1 PREDICTED: ATP-binding cassette sub-family F member 1 isoform X3 [Heterocephalus glaber]

Length: 837 aa      View alignments
>XP_004847150.1
MERLKKLSVPASDEEDGGEWQGPGRPPRCRGSLLSPACPPLVASVPAPTPRGGKKAKGGNAFAALIQDQSEEEEEEEEEKHPPKPAKPEKDRINKAVSEEQQPGLRSKKGKEEKARGKAKPQNKFAALDDEEEDGEDEEDIRKEEEPPTQGKARAEQGSEEGGGEAVDSKAEDPLAHLSKKEKKKLKKQMDYERQVASLKAANAAENDFSVSQAEVSSRQAMLENASDIKLEKFSISAHGKELFVNADLFIVAGRRYGLVGPNGKGKTTLLKHIANRALSIPPNIDVLLCEQGEAGPGPGTGGCWREAGSRDTGLERHRAGQGHLPEVGLRDVRGSLAGSGLIALLLPEVVADETPAVQAVLRADTKRLKLLEEERRLQGQLEQGDDTAAEKLEKVYEELRATGAAAAEAKARRILAGLGFDPEMQNRPTQKFSGGWRMRVSLARALFMEPTLLMLDEPTNHLDLNAVIWLNNYLQGWRKTLLIVSHDQGFLDDVCTDIIHLDAQRLHYYRGNYMTFKKMYQQKQKELLKQYEKQEKKLKELKAGGKSTKQAEKQTKEALTRKQQKCRRKNQDEEAQEAPELLKRPREYTVRFTFPDPPPLSPPLLGLHGVTFGYEGQKPLFKNLDFGIDMESRICIVGPNGVGKSTLLLLLTGKLTPTRGEMRKNHRLKIGFFNQQYAEQLRLEETATEYLQRGFNLPYQEARKCLGRFGLESHAHTIQICKLSGMVGGRRAPTCSACECVAGVAEPLSLLQVGRRPGLCSQSWPVGSPTSSSWTSRPTTWTSSPSMPWGRPSTSTRAVRSTWEGTALQRPWAEAPSSCPDPLPPLFLQSRNHREP