Sequence details NCBI ID: XM_004847069.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Mdc1
Gene Name mediator of DNA-damage checkpoint 1, transcript variant X3
Entrez Gene ID 101702518

Database interlinks

Part of NW_004624754.1 (Scaffold)

For more information consult the page for NW_004624754.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

MDC1 ENSCPOG00000024287 (Guinea pig)

Gene Details

mediator of DNA-damage checkpoint 1

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000014987, Guinea pig)

Protein Percentage 68.28%
CDS Percentage 79.19%
Ka/Ks Ratio 0.6232 (Ka = 0.2212, Ks = 0.355)

MDC1 ENSG00000137337 (Human)

Gene Details

mediator of DNA-damage checkpoint 1

External Links

Gene Match (Ensembl Protein ID: ENSP00000365588, Human)

Protein Percentage 61.1%
CDS Percentage 73.92%
Ka/Ks Ratio 0.62847 (Ka = 0.2957, Ks = 0.4705)

Mdc1 ENSMUSG00000061607 (Mouse)

Gene Details

mediator of DNA damage checkpoint 1

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000080949, Mouse)

Protein Percentage 49.29%
CDS Percentage 62.96%
Ka/Ks Ratio 0.54651 (Ka = 0.4605, Ks = 0.8426)

Mdc1 ENSRNOG00000032813 (Rat)

Gene Details

mediator of DNA damage checkpoint 1 (Mdc1), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000049009, Rat)

Protein Percentage 54.07%
CDS Percentage 66.26%
Ka/Ks Ratio 0.52383 (Ka = 0.3949, Ks = 0.7539)

Genome Location

Sequence Coding sequence

Length: 4803 bp    Location: 25008042..25020883   Strand: +
Raw sequence   
>XM_004847069.1
ATGGAAGACACCCAGACTATTGACTGGGCTGTTGAGGAAGAGGAGGAGACAGAGCAATCCAGTGAATCCTTGGAGTGTAGCTTGGAGCCTGTAGGGAGACTGCGTGTCTTCGGTGGTGCCTATGGACCAGAAAAAGATTTCCCACTGTACCTTGGGAAGAATGTGGTAGGCCGAATGCCTGATTGCTCAGTGGCCCTGCCCATTCCATCCATTTCCAAACAACATGCTGTGATTGAAATCTCGGCACGGAACAAGGCACCTGTCCTTCAGGATTGTGGGAGCCTCAATGGCACCCAAATCCTGAGGCCGCCTAAGATCCTGAGCCCGGGGGTGAGACATCCTCTGAGAGACCATGAACTGATCCTCTTCGCTGATTTGCCCTGCCAGTACCGCCATCTAGATGTGCCCCAGCCCGTGGGCTCCCGGGGCCCTCTAACTGTAGAGGAGACCCCCTGGGTCCCGGGAGCTGCTCAGGCTACCAGGCCTCCGTTGGCTGAGGACTCGGAGGAGGAGGCAGATTTTCTTTCTGAAAGGTGTATGGAGAAAGAATCAAGGGCCACATCTTCCCCTTTGACAATAGTTCCAGAAAGTGATGATGAGGGGCCTTCTCCAGCCCCAGGTGGCTCTGGACCATCTTTGGCTTTCAACTTGGACAATGACACAGATGACAAAGCAGCGAAGTCTGCATCAGTGGTGAGGAATGGTGCCCCAACAAAGGCCAAGCAGCCTGGAGGTGATGGAGCCACACACGACACCTGGCTGGTAAAGGCTCCACCTGCAGTGGGAAGGGACAAAGACACGGCAGTCAGGAGGGATGCAGGCAAGAAGGTGGTTCTGGAGAGGAGCCACCCTCCAGGGGAGGTCAGTGACACAGATGCAGACAAAGACAGCAGGCCAGCCAGGCTCCACCTGGAAAGAGCACAGCCTTCCGGCTTCATGGACAGTGACACCGATGTGGAAGAGGAGGGCATCCCTGCGACCCCAGCTGCAGTTCCCATGAAGAAGAGGCCGATCTTCCATGTAGCTGGAGCCCTCAGCCTGGCGCATCTGCAGGAGAGCCCAGCTGGTAGAGATACAGATGTGGAAGAGCAGAAGCCCCTGCCAGCGGGAAGCCAGACTTCCATGGTGATCAACAGTGACACAGATGATGAAGAAGAAGTCTCTGCAGCGCTCACCTTGGCGCAGCTGAAAGAGAGTGGAGCTGTTCAGTGGAACAAAGACTTAGATGCAGAAAGGGCCAGAGCCCAGCCCATGGTCTCTTTAGAGCAGAACCAAACCACCTTGGGGAGAGACAGCGACACAGACGTGGAGGAGGAAAGGCTCCCAGTGGGAAAGAGGGAATCTGTCCCCAGTGCTTACACAGAAAAGGATGAGGCCCTTGTTACAGCACATTCTAGAGAAAGCCGACCTCCCCGTGGAGACAGTGGTGCAGGTAGGAGCTCCCATGGGACCCACCTGGAGAGAAGCCAAGCCTCCCCCACCACAGTGAACATCAAGACAGAAGCAGAGGAGGAAGTCCCCCCAGGGCCAGCTGTTCCACACCTGGAGAGCCGTCAGGTGTCTGTGGAGGAAACAAATCAAGCAGCAAAGCAGCTCGTGCCTGTTGGGGAAAGCAGACCTCCTGTCAAAGCCAATGTGGAGGGGGATGCAACCTCAGCAGTGGCAGCTGTGAGACAAAGCAAGTGTCTGGCAAAAGGGGATGCTCATGAGACGACTCCAGAAGTGGGGGCCCATGGCAGGGCACCTGTGACACAAAGGGAGCAGGTGGTGCACAAAGGCACCCCAGGAAACCCCACCCCGCCACAGAGAGGAGGAGCACCTACCCCTGCAGAAAGGAAGAGGAAATCATATTTGGCCAGGACCAGGGCCTCCAAAGAGAGCCCTGCTGCAGATTGTGAAGATCTGGACCTTCAAGCTACCCAGTGCTTTGTGGAGAGTGAGAGCCTGGAAGCCAGCCAGGGTTTGGAGGATGAACCCACCCAGGCCTTCCCCTGTGTGCTCGCGCCGGAGCCTGGCCCTTCCCACTGCAGCGCTCAAGCCCCAGGGGCGCTGGATGAGCCTTGGGAAGTCTTGGCTACACAGCCCTTCTGTGTGGGAGAGCCTGAAGCCTCCGCACCCTGGCCCATGACCGCCCTCCTAGAGGCCTGCAGCTCTCATCTGTCTCCACGAGACCAGCATCCAGGGAGCCCGGCTCACATGGAATCACTGGGGACTGAAGGCAGAGCGACGCAGACTGTGGAGACAGATAGGGGTACAGCAAGTGAAACAGCAGAGAGGGTGACCCCTGAGAGAGGAACACAAGAGAGAGACATGAGGGAGCAGCTAGCAGGAGACAGTGCAGATGAGTTGGAGGAGAAAAAGTTAACTAGGAGGATAAAGGACAGAGAGCAGAAGCAGGTGTTAGCTGGAGCTGCTCAGGGCCCAGAGTCTGGCAGAAAGGTGGAAAGTGTGAGTCCTGAAAGGAGCAGGGAGAGCCCGAAAGAGGAAATGGAGACATCCAAGAAAGCAGGAGAGGAAGACATCCAGAGGGAGACCCTTGCAAGAGAAGCACTCAAGGGGCTTATAGAGAAATCGGTGCCGGAAGCAGGGTGTGGGCTAGCAGAGGCTGGGTTAGCAGTGGCCCTGGAGCAAGGAGAGATGGACCGAGGGCATGGGGACCCCGAAGGGCCGGGGGGCCTGGAAGAGCAGGCTGCCCCAGCAAGCCCAGAGCCTGGAGTGGGGGCGGGGCGCCAGGCAGGTGGAGCGAAGGGAGCCCCAGGGAGCCCCAGCGGGCAGCCCAGAGGTCCTGTGAATGGCAAGAGGCCACCTGCTGAGCAGGCTTCGGGGGGAGATCCGCAGTCTCCAGACGCGTGCCTGCCTGCTGTGGCACCCGGAGCCTCCATCCCACCCTCAGGCCCCTTTACCTCTCGGCCCCTTCGTTCTCCTCTTGCGTCTTCTGACCCCGCCATTCCCAGGGGCAGGCGCAGTGGGAGACGGGAGGCTCCAGAGCCTGCCCTGTCCTCAGAGCTGGACCCTTTCCCGACAAAGCCCAGTGTTGGGCGCCGGGCCTCCTCCAGGGTGGCCACCACTTCGCTTTCCACTGCTGCCCGTGTGCCCCGCCCTCCCACTCCCATGGAGCAGCCTGCTCCCCCTGGGCCCATGTCTCGGGCAAGTCAGGCCAGGACACTGAGGCCCTCTGCCAAGACTCCCGAGGCAGTGGGAGCAACAGCCCCCGAGCTCCAGGCGTCCACCTGCACCTCCACAGAGCAGCCTGTCGCCCCTGAGCCCACACCTCGGGCCACGAGGGCCCGCACAAGTAGGGCCTCTGCCAGGGCCCCCAAGGCAGCGGAAGCAACAGCCCCCGAGCTGCAGCCCTGTGCCCCCACACACCGCCCCCGCACACCTTGGGCCACCCGAGGGAGAGCACGTAGGGCCTCTGTCGGGAGCTCCGAACCAGTCTTCCCCATGAGCTCTGAGCTGCAGGCGTCCACCTCCACACAGCAGCCTGTCACCCCCGAGCCCGCACCTCGGGTCACTTGTGGGAGAAGAAACAGGTCCTCTGCCAAGACCCCTGAAGCAGTTGAACCAACAGCCCCTGAGCCCCAGCCCTCCGCCTGGACCTCCACAGAGCCTCCTGTCACCCCCAAGGTGACACCTTGTCACACCACAGCTCAGGGCAGAGCCCCCCAGGAATCCCAGCCTTCTGTCACCACAGGCCATGCCCGTGAGCCCATCCCTCAAGCCCGTCGCAGCAGGAGACAGAGGGCTGCTGGGAAGCCTGGCTCCTTCACACCTCCCAGTATCCATCAGCCTTGCTCTGAACCTCAAAACCGACCCGCAAGGCACCAAAGGGCAGGCAGGCTGAGGGCAGCTACGTCCCTTGGGACTGTTCCTGACCCTCCCTTTCCCCAGCTTCCTGAGGCGCCCACTCAGGCCGACCAAATCCCAAAGACAGAACCAGCAGATGGCCCCAGGTCTACCCTGGAGCCACAGCCTGGGGCCCCTCAAAGGCACAGGAGGCCCCCCGCCAGTGCAGATTCACCCCCTCTTCTAAAGCGGCCCCAAAGAGAAGGCTCCCCAAAGACAGTGGTCCCCAAGGGAGAGGAAGACGGTTCTGCAGAGAGGCCTGGCAAGGCAGAGGATGTGGGGGCTCCAGGACCAGGCAAGAGGAAGAGGGACCAGACAGAGAAGGAGCCCCAGGAAGTTCCAAAGCGTGGCCTCCGTAGGACCAAACCTGCTCAGCAATCGACAGCCCCCAGAGTCCTCTTCACAGGAGTGCTGGACACCCGTGGGGAGCGGGCCCTGCTGGCCCTGGGGGGCAGTCTGGCCAGCTCGGTGGCAGAGGCCTCCCACCTGGTGACTGATCGCGTCTGCCGGACAGTCAAGTTCCTGTGTGCCCTGGGGAAGGGCATCCCCATCCTCTCCCTGGAGTGGCTGCATCAGTCTCGAAAGGCCGGTCACTTCCTGCCCGCGGATCAGTATGTGGTGACCGATCCCGAGCAGGAGAAAAACTTCGGCTTTAGCCTTCAGGATGCCCTGACTCGGGCGAAGGAGCGAAGACTGCTGGAGGGCTATGAGATTCACGTGACCCCTGGGGTCCAGCCCCCACCCCTGCAGATGGCAGAGATTATCAGCTGCTGTGGAGGCACCGTCCTACCCAGCATGCCCCGCTCCTATAAGCCTTGTAGAGTGGTGATCACCTGCCCCCAGGACGTGCCACACTGCTTCCCCGCATCCCGGGCCGGCCTGCCCCTGCTTTCTGCAGAGTTCCTGCTGACCGGGGTGCTGAAGCAGGAAGCCAGGCCCGAGGCCTTCCTCCTCTAG

Related Sequences

XP_004847126.1 Protein

Mdc1 PREDICTED: mediator of DNA damage checkpoint protein 1 isoform X3 [Heterocephalus glaber]

Length: 1600 aa      View alignments
>XP_004847126.1
MEDTQTIDWAVEEEEETEQSSESLECSLEPVGRLRVFGGAYGPEKDFPLYLGKNVVGRMPDCSVALPIPSISKQHAVIEISARNKAPVLQDCGSLNGTQILRPPKILSPGVRHPLRDHELILFADLPCQYRHLDVPQPVGSRGPLTVEETPWVPGAAQATRPPLAEDSEEEADFLSERCMEKESRATSSPLTIVPESDDEGPSPAPGGSGPSLAFNLDNDTDDKAAKSASVVRNGAPTKAKQPGGDGATHDTWLVKAPPAVGRDKDTAVRRDAGKKVVLERSHPPGEVSDTDADKDSRPARLHLERAQPSGFMDSDTDVEEEGIPATPAAVPMKKRPIFHVAGALSLAHLQESPAGRDTDVEEQKPLPAGSQTSMVINSDTDDEEEVSAALTLAQLKESGAVQWNKDLDAERARAQPMVSLEQNQTTLGRDSDTDVEEERLPVGKRESVPSAYTEKDEALVTAHSRESRPPRGDSGAGRSSHGTHLERSQASPTTVNIKTEAEEEVPPGPAVPHLESRQVSVEETNQAAKQLVPVGESRPPVKANVEGDATSAVAAVRQSKCLAKGDAHETTPEVGAHGRAPVTQREQVVHKGTPGNPTPPQRGGAPTPAERKRKSYLARTRASKESPAADCEDLDLQATQCFVESESLEASQGLEDEPTQAFPCVLAPEPGPSHCSAQAPGALDEPWEVLATQPFCVGEPEASAPWPMTALLEACSSHLSPRDQHPGSPAHMESLGTEGRATQTVETDRGTASETAERVTPERGTQERDMREQLAGDSADELEEKKLTRRIKDREQKQVLAGAAQGPESGRKVESVSPERSRESPKEEMETSKKAGEEDIQRETLAREALKGLIEKSVPEAGCGLAEAGLAVALEQGEMDRGHGDPEGPGGLEEQAAPASPEPGVGAGRQAGGAKGAPGSPSGQPRGPVNGKRPPAEQASGGDPQSPDACLPAVAPGASIPPSGPFTSRPLRSPLASSDPAIPRGRRSGRREAPEPALSSELDPFPTKPSVGRRASSRVATTSLSTAARVPRPPTPMEQPAPPGPMSRASQARTLRPSAKTPEAVGATAPELQASTCTSTEQPVAPEPTPRATRARTSRASARAPKAAEATAPELQPCAPTHRPRTPWATRGRARRASVGSSEPVFPMSSELQASTSTQQPVTPEPAPRVTCGRRNRSSAKTPEAVEPTAPEPQPSAWTSTEPPVTPKVTPCHTTAQGRAPQESQPSVTTGHAREPIPQARRSRRQRAAGKPGSFTPPSIHQPCSEPQNRPARHQRAGRLRAATSLGTVPDPPFPQLPEAPTQADQIPKTEPADGPRSTLEPQPGAPQRHRRPPASADSPPLLKRPQREGSPKTVVPKGEEDGSAERPGKAEDVGAPGPGKRKRDQTEKEPQEVPKRGLRRTKPAQQSTAPRVLFTGVLDTRGERALLALGGSLASSVAEASHLVTDRVCRTVKFLCALGKGIPILSLEWLHQSRKAGHFLPADQYVVTDPEQEKNFGFSLQDALTRAKERRLLEGYEIHVTPGVQPPPLQMAEIISCCGGTVLPSMPRSYKPCRVVITCPQDVPHCFPASRAGLPLLSAEFLLTGVLKQEARPEAFLL