Sequence details NCBI ID: XM_004847054.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Vars2
Gene Name valyl-tRNA synthetase 2, mitochondrial, transcript variant X10
Entrez Gene ID 101726746

Database interlinks

Part of NW_004624754.1 (Scaffold)

For more information consult the page for NW_004624754.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

VARS2 ENSCPOG00000021834 (Guinea pig)

Gene Details

valyl-tRNA synthetase 2, mitochondrial

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000019702, Guinea pig)

Protein Percentage 86.15%
CDS Percentage 87.79%
Ka/Ks Ratio 0.18818 (Ka = 0.0739, Ks = 0.3926)

VARS2 ENSG00000137411 (Human)

Gene Details

valyl-tRNA synthetase 2, mitochondrial

External Links

Gene Match (Ensembl Protein ID: ENSP00000441000, Human)

Protein Percentage 83.79%
CDS Percentage 85.36%
Ka/Ks Ratio 0.19033 (Ka = 0.0895, Ks = 0.4705)

Vars2 ENSMUSG00000038838 (Mouse)

Gene Details

valyl-tRNA synthetase 2, mitochondrial (putative)

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000047917, Mouse)

Protein Percentage 81.51%
CDS Percentage 82.83%
Ka/Ks Ratio 0.17982 (Ka = 0.1076, Ks = 0.5982)

Vars2 ENSRNOG00000000833 (Rat)

Gene Details

valyl-tRNA synthetase 2, mitochondrial (Vars2), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000046565, Rat)

Protein Percentage 81.32%
CDS Percentage 82.61%
Ka/Ks Ratio 0.18051 (Ka = 0.1093, Ks = 0.6057)

Genome Location

Sequence Coding sequence

Length: 3192 bp    Location: 24870888..24856704   Strand: -
Raw sequence   
>XM_004847054.1
ATGCCTCATTTCCCTCTGGCCACTTTTCTTCGACCGCCACTTTGGGGGCTGAGGCCCTCGCGGAGTCTTCCCAGGCCACGGCGCCTTTCTGCGCAGTCAGAGCCCCATGGATCACCCATCACCAGGAGGAACCGAGAAGCCAAACGGAAGCGCCTGCGGGAGAAGCAGGCGGCGCTGCAGGCTGGAATAGCCGGGGAGAGCGAGTCACCTGGAGAAACCAGGAAGACCTGGAGTCCCAAGGAGAGAGTAGTATATGGAGTTCCCACGGAGCCTGGCGAAAAGAAAGATGTCTCTGGGGCCCTACCTCTTGCTTACAGCCCCCAGTATGTGGAAGCTGTTTGGTACCAGTGGTGGGTGCGAGAGGGCTTCTTCAGGCCAGAGTATCAGGCACAGCTGCCCCAGGCTACAGGGGAGACTTTTTCCATGTGTATCCCACCTCCCAATGTCACAGGTGCCCTGCACCTCGGCCATGCTCTCACTGTGGCCATCCAGGACGCCCTTGTGCGCTGGCACCGGATGCGTGGGGATCAAGTGCTGTGGGTCCCTGGCTCGGATCATGCAGGAATTGCTACACAAGCTGTGGTAGAGAAACAACTGTGGAAGGAGCGGGGAGTGAGGAGACACGAGCTGAGCCGGGAGGAGTTCCTAAGGGCGGTGTGGCAGTGGAAGGACGCGAAAGGAGGAGAGATTTGTGAGCAGCTTCGCGCGCTGGGCTGCTCCCTGGACTGGGGCCGAGAGTGTTTTACCATGGATGTGGGCTCCTCAGTGGCTGTGACTGAAGCTTTTGTGCGACTCTACAACGAGGGACTGCTGTACCGGAGCCGCCAGCTTGTCAGCTGGTCGTGTGCTTTAAGATCAGCCATCTCGGATGTTGAGGTGCAGAGCCGGCCCCTGGCTGGGCGCACAGAGCTCCAGCCGCCAGGCTGCCCCAGCCCTGTGTCTTTTGGGCTCCTCATTTCTGTCGCCTTTCCGGTGGACGGAGAGCCGGATGCGGAAGTCGTGGTGGGAACCACGAGGCCGGAGACTTTGCCTGGAGACGTGGCGGTGGCCGTTCACCCCGATGACCCCCGATACTCGCATCTCCATGGGCGGCAGCTGCGTCACCCCTTGACAGGGCAGCTTCTGCCCCTCATCACGGACACTGCTGTGCAGCCGCACGAGGGCACAGGCGCAGTGAAGGTGACTCCAGCTCACAGTCCCGCGGATGCCGAGATGGGAGCCCGGCACGGCCTGAGCCCCCTCAGTGTCATTGAGGAGGACGGGACCATGGCGTCGCCTTGCGGGGACTGGCTGCAGGGCATTCACCGGTTTGTGGCCCGGGAGAAGATTGTGTTGGCCCTGAGGGAGCAGGGCCTGTTGCGGGGCCTCCAGGACCACCCCATGGTGCTGCCCGTCTGCAGCCGCTCTGGGGACGTGGTTGAGTACCTGCTGAAGAGCCAGTGGTTCGTCCGCTGCCAGGAGATGGGGGACCGAGCTGCCCAGGCCGTGGTGTCGGGTGCCCTGGAGCTCTGCCCCTCCTCCCACCAGAAGAGCTGGCAGCACTGGTTTGCCCACATCGGGGACTGGTGCATCTCTCGGCAGCTGTGGTGGGGCCATCAGATTCCAGCCTACCTGGTGGTCGGGGAGCCCTCGGAGGGTGACGGGGAGGAGTGCTGGGTGGTCGGGCGGTCGGAGGCTGAGGCCAGACAGGCGGCAGCAGCACTGACCGGAAAGCCAGGCGCCGAGCTGACCCTGGAGAGGGATGCTGACGTCCTGGACACGTGGTTCTCCTCGGCTCTTTTCCCCTTCTCCGCCCTGGGCTGGCCTCGAGAGACCTCCGACCTGGCCCGTTTCTACCCCCTGTCGCTCCTGGAGACGGGCAGTGACCTCCTGCTGTTCTGGGTGGGCCGCATGGTCATGCTGGGCACCCAGCTCACGGGCCAGCTCCCCTTCAGCAAGGTGCTCCTTCACTCCATGGTTCGGGACGGGCAAGGGCGGAAGATGAGCAAGTCCCTGGGGAACGTGCTGGACCCGAGGGACGTCATCCATGGGGTGGAGCTGCAGGAGCTGCAGGCAAAGCTGACCACCGGGAACCTGGACCCCGCGGAGCTGGCCATTGCGGCTGCAGCACAGAAAAAGAACTTTCCTCACGGGATCCCTGAGTGCGGGACAGATGCCCTGAGATTCGCACTGTGCTCCCACGGAGCGCAGGGGCGCGACCTGCACCTGTCTGTCCCTGAGGTCCTGGGCTGCCGTCGTTTCTGCAACAAGATCTGGAATGCCCTGCGCTTTATCCTCAGAGCCCTGGGGGAGGGTTTTGTCCCCCATCCGTCAGAGGAGCTGTGCCCCTCCTCGCCGGTGGACGCCTGGATCCTGAGCCGCCTGGCCCTGGCTGCCCAAGAGTGTGAGCGTGGCTTCGTCACCCAGGAGCTCTCGCTGGTCACCCACACCCTGCACCACTTCTGGCTGCACAGCCTCTGCGACATCTACCTGGAGGCTGTGAAGCCGGCGCTGGCCCGTGTGCCTTGCCCACAAGGGCCGCCTCAGGTCCTCTTCTCCTGCGCGGACATCGGGCTCCGCCTCCTCGCCCCGGTGATGCCCTTCCTGGCCGAAGAGCTCTGGCAGAGGCTGCCCCGCAGGCCCGGTGGGCCCCCTGCCCCCAGCGTCTGTGTCGCCCCCTACCCCAGTGCCCGCAGCCTGGAGCACTGGCGCCAGCCTGAGCTGGAGTGGGGCTTCTGCCGGGTCCAGGAGGCTGTGCAGGTGCTGCGGGCTCTCCGAGCCACCTACCAGCTCACCAGAGCCCGGCCCCGAGTGCTGCTGCAGAGCTCGGAGCCAGAGGAGCAGGGCCTCTTCCAGGCCTTTCTGGAGCCCCTGGGCGCCCTGGGCCACTGCGGGGCTGTGGGCCTCCTGCTCCCAGGCACAGCAGCTCCCTCTGGCTGGGCCCAGGCCTCTGTCAGTGACACCATTCGGGTCTACATGGAGATACAGGGCCTGGTAGACCCCCAGGCCCAGCTACCTCTGCTGGCTGCCCGAAGGCAGAAGTTGCAGAAGCAGCTTGATGGCCTCGCAGCCCAGACTCCATCAGAAGGGGAGGCAGAGACACAGAGGCAGCAAAGGCTATCCTCCCTCCAGCTGGAATTATCAAAGCTGGATCAGGCGGCCTCTCACCTCCGGCAGCTGATGGATGATGCTCCCAGCCCCGGGGAGCGCTGA

Related Sequences

XP_004847111.1 Protein

Vars2 PREDICTED: valine--tRNA ligase, mitochondrial isoform X10 [Heterocephalus glaber]

Length: 1063 aa      View alignments
>XP_004847111.1
MPHFPLATFLRPPLWGLRPSRSLPRPRRLSAQSEPHGSPITRRNREAKRKRLREKQAALQAGIAGESESPGETRKTWSPKERVVYGVPTEPGEKKDVSGALPLAYSPQYVEAVWYQWWVREGFFRPEYQAQLPQATGETFSMCIPPPNVTGALHLGHALTVAIQDALVRWHRMRGDQVLWVPGSDHAGIATQAVVEKQLWKERGVRRHELSREEFLRAVWQWKDAKGGEICEQLRALGCSLDWGRECFTMDVGSSVAVTEAFVRLYNEGLLYRSRQLVSWSCALRSAISDVEVQSRPLAGRTELQPPGCPSPVSFGLLISVAFPVDGEPDAEVVVGTTRPETLPGDVAVAVHPDDPRYSHLHGRQLRHPLTGQLLPLITDTAVQPHEGTGAVKVTPAHSPADAEMGARHGLSPLSVIEEDGTMASPCGDWLQGIHRFVAREKIVLALREQGLLRGLQDHPMVLPVCSRSGDVVEYLLKSQWFVRCQEMGDRAAQAVVSGALELCPSSHQKSWQHWFAHIGDWCISRQLWWGHQIPAYLVVGEPSEGDGEECWVVGRSEAEARQAAAALTGKPGAELTLERDADVLDTWFSSALFPFSALGWPRETSDLARFYPLSLLETGSDLLLFWVGRMVMLGTQLTGQLPFSKVLLHSMVRDGQGRKMSKSLGNVLDPRDVIHGVELQELQAKLTTGNLDPAELAIAAAAQKKNFPHGIPECGTDALRFALCSHGAQGRDLHLSVPEVLGCRRFCNKIWNALRFILRALGEGFVPHPSEELCPSSPVDAWILSRLALAAQECERGFVTQELSLVTHTLHHFWLHSLCDIYLEAVKPALARVPCPQGPPQVLFSCADIGLRLLAPVMPFLAEELWQRLPRRPGGPPAPSVCVAPYPSARSLEHWRQPELEWGFCRVQEAVQVLRALRATYQLTRARPRVLLQSSEPEEQGLFQAFLEPLGALGHCGAVGLLLPGTAAPSGWAQASVSDTIRVYMEIQGLVDPQAQLPLLAARRQKLQKQLDGLAAQTPSEGEAETQRQQRLSSLQLELSKLDQAASHLRQLMDDAPSPGER