Sequence details NCBI ID: XM_004847038.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Cchcr1
Gene Name coiled-coil alpha-helical rod protein 1, transcript variant X4
Entrez Gene ID 101723697

Database interlinks

Part of NW_004624754.1 (Scaffold)

For more information consult the page for NW_004624754.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

CCHCR1 ENSCPOG00000023394 (Guinea pig)

Gene Details

coiled-coil alpha-helical rod protein 1

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000014724, Guinea pig)

Protein Percentage 81.4%
CDS Percentage 86.35%
Ka/Ks Ratio 0.22945 (Ka = 0.1032, Ks = 0.4498)

CCHCR1 ENSG00000204536 (Human)

Gene Details

coiled-coil alpha-helical rod protein 1

External Links

Gene Match (Ensembl Protein ID: ENSP00000379566, Human)

Protein Percentage 78.32%
CDS Percentage 82.75%
Ka/Ks Ratio 0.23755 (Ka = 0.1386, Ks = 0.5833)

Cchcr1 ENSMUSG00000040312 (Mouse)

Gene Details

coiled-coil alpha-helical rod protein 1

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000046612, Mouse)

Protein Percentage 72.16%
CDS Percentage 78.1%
Ka/Ks Ratio 0.22083 (Ka = 0.1819, Ks = 0.8237)

Cchcr1 ENSRNOG00000050233 (Rat)

Gene Details

coiled-coil alpha-helical rod protein 1 (Cchcr1), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000067117, Rat)

Protein Percentage 74.03%
CDS Percentage 78.24%
Ka/Ks Ratio 0.15323 (Ka = 0.1686, Ks = 1.1001)

Genome Location

Sequence Coding sequence

Length: 2334 bp    Location: 24770341..24781711   Strand: +
Raw sequence   
>XM_004847038.1
ATGTTGCCACCTTCAGGTCTCTCTGGGCTGGTTCCCCCTTCCCACTTCCAAGCTCGGCCCTTTCCCGCTCAGTCCAGAGCGGCTCCACCCTGGGTCTCAGACATTCCCCCCTCCCAGCCCCGGGCCCACCAAGATGTCTCAGAAAGACACCAGAGGCCTCCGGTGACCGCGTGGGAGCAGGGTGTTTCTGGTGCTGGGCATGGGCCCTGTCGGAGAGGCAGGTCCCTGGAGCTGGCGGGGTCGCAGGCCCTGAGCGAGCAGGCAGAACTCATCTCTCGGCAGCTGCAGGAGCTGCGGCGGCTGGAGGAGGAGGTGCGGGGCCTGCGGGAGACCTCGCTGAAGCAGAAGATGAGGCTGGAGGCCCAGGCTGTGGAGCTGGAGGCTTTGGCACGGGCTGAGAAGGCCAGCCAAGTTGAGGCTGAGGGCCTGCGCGCCGCCTTGGCCGGGGCTGAGGTTGTCCGGAAAAACCTGGAAGAGGGCACCCAGCGGGAGCTGGAGGAGGTTCAGAGGCTGCATCAAGAGCAGCTGTCCTCCCTGATGCAGGCTCACCAGGAGGCTCTGGCCAGTTTGACCAGCAAAACTGAGGGGCTGGAGAAGTCTCTGAGAAGCCTGGAAGCCAGGAGGGCAGGGGAAGCCAAGGAGCTGGCTGAGGCCCTGAATGAGGCTGAGCTGCTGCGGAAGCAACTGAGCAAGACCCAGGAGGACTTGGAGGCTCAGGTGGTCCTGGTTGAGAATCTGCGGAAATATGTGGGGGAACAAGTCCCTCCCGAGGCCGGCAGCCAGGCGTGGGAACCTGAGCGGCAGGAGCTTCTGGACACCGTGCAGCGCCTGCAGGAGGACCGGGCTGGCCTGCACACCACTGCTGAGCTGCTACAGGTGCGTGTGCAGAGCCTCGTGTGCGTGCTCGCCCTGCAGGAGGAGGAGCTGACCAGAAAGCTCCCGCCTTCAGACTCCCTGGAGCCCGAGTGTGTGAGGAAGCATCAGTCCTTGCTGAGCCGCTGGCGGGAGAAGGTGTTTGCCCTCCTGGTGCAGCTCAGGTCCCAGGAGCTGGAGCACAGAGACTCGGTGAAGGCGCTGCAGGGACAGGTGGCAGAGCTCCAGGAACAGTTGATAGCCCAGAGCCAGGAACGGGCCATCCTGCAGCGGTCCCTGCAGGACAGAGCTGCGGAGGTGGAGGTGGAGCGGATGGGCACCCAGGTCCTGCAGCAGGAGCTGAGCAGAGCTCAGGAGGCCCGGCAGCGGCAGCAGCAGCAGACAGCCAGGGCGGAGGAGCAGCTGAAGCTGGTGGCCGGCGCCGTCTGCAGCTGCCAGATCGCCCTCCAGAGCACCACGGCAAAGCTGGAACAGGCTGTAGCCCGGCTTCCCAGTCTCGGCAACCGACTCAGCTATGCCGTCCGCAAGGTGCACACCATTCAGGGCCTGATGGCTCGAAAACTGGCCCTGGCTGAGCTGCACCTGGAGAGCTGCCCCCCACTCGCACCCCCCGCCGACACCGAGGTGCGCCTTGAGCTGCAGCAGCTGCGGGAAGAGCGGAACCGCCTGGATGCAGAGCTGCAGCTGAGCGCCCGCCTCATCCAGCAGGAGGTGGGCCGGGCACGGGAGCAAGGGGAGGAGGAGCGCCAGCAGCTCAGCAAGGTGGCTCAGCAGCTGGAGCAGGAGCTGCAGCGGGCCCAGGAGGCCCTGGCCGGTGTGGGGCTGCAGCTGGAAGCAGCGCGGCAGGGCCAGCAGGAGAGCACGGAGGAGGCCGCCAGCCTGCGGCAGGAGCTGGCCCAGCAGCAGGAGACCTACGCCAGAGCTCTGCAGGAGAAGGTGGCCGAGGTGGAGACTGGGCTGCGGGAGCAGCTCTCGGATGCGGAGCGGAGGCTGAATGAGGCCCGGAGGGAGCAGGCCAAGGCCGTGGTCTCCCTGCGCCAGACCCAGCGCAAGGCCGCGGGGGAAAAGGAGCGGAACCAGGAGCTCAGGCGGCTGCAGGAGGAGGCCCGGAAGGAGGAGGGGCAGCGGCTGAGCCGGCGCTTGCAGGAGCTGGAGAGGGACAAGAACCTCATGCTGGTCACCTTGCAGCAGGAGGGTCTCCTCTCCCATTACAAGCAGCAGCGGCTGTTGGCGGTTCTCCCCTCCCTGCTGGACGAGGGGAGGCCCGCGGAGTCGAGCTCCAGGCCTCCGGGGTCCGCAGCACCTGTACTTCCAGCGGCTGCACCGTCCACCAGGAAGTCCGGAAGAGGATCCCTCTCCCTGCTGCTGGACAGCCTGCAGGGCCTGAGCGAGGCCATTGCTGAGGAAGAAGCTGTTTGCCAAGGAGACAGCCAGCGCTGTCCGGCTCCAGTCCACGGCTGA

Related Sequences

XP_004847095.1 Protein

Cchcr1 PREDICTED: coiled-coil alpha-helical rod protein 1 isoform X4 [Heterocephalus glaber]

Length: 777 aa      View alignments
>XP_004847095.1
MLPPSGLSGLVPPSHFQARPFPAQSRAAPPWVSDIPPSQPRAHQDVSERHQRPPVTAWEQGVSGAGHGPCRRGRSLELAGSQALSEQAELISRQLQELRRLEEEVRGLRETSLKQKMRLEAQAVELEALARAEKASQVEAEGLRAALAGAEVVRKNLEEGTQRELEEVQRLHQEQLSSLMQAHQEALASLTSKTEGLEKSLRSLEARRAGEAKELAEALNEAELLRKQLSKTQEDLEAQVVLVENLRKYVGEQVPPEAGSQAWEPERQELLDTVQRLQEDRAGLHTTAELLQVRVQSLVCVLALQEEELTRKLPPSDSLEPECVRKHQSLLSRWREKVFALLVQLRSQELEHRDSVKALQGQVAELQEQLIAQSQERAILQRSLQDRAAEVEVERMGTQVLQQELSRAQEARQRQQQQTARAEEQLKLVAGAVCSCQIALQSTTAKLEQAVARLPSLGNRLSYAVRKVHTIQGLMARKLALAELHLESCPPLAPPADTEVRLELQQLREERNRLDAELQLSARLIQQEVGRAREQGEEERQQLSKVAQQLEQELQRAQEALAGVGLQLEAARQGQQESTEEAASLRQELAQQQETYARALQEKVAEVETGLREQLSDAERRLNEARREQAKAVVSLRQTQRKAAGEKERNQELRRLQEEARKEEGQRLSRRLQELERDKNLMLVTLQQEGLLSHYKQQRLLAVLPSLLDEGRPAESSSRPPGSAAPVLPAAAPSTRKSGRGSLSLLLDSLQGLSEAIAEEEAVCQGDSQRCPAPVHG