Details from NCBI annotation

Gene Symbol Ddx39b
Gene Name DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B, transcript variant X3
Entrez Gene ID 101719937

Database interlinks

Part of NW_004624754.1 (Scaffold)

For more information consult the page for NW_004624754.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

DDX39B ENSCPOG00000002335 (Guinea pig)

Gene Details

DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000002121, Guinea pig)

Protein Percentage 99.29%
CDS Percentage 94.12%
Ka/Ks Ratio 0.00889 (Ka = 0.003, Ks = 0.3403)

DDX39B ENSG00000198563 (Human)

Gene Details

DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B

External Links

Gene Match (Ensembl Protein ID: ENSP00000379475, Human)

Protein Percentage 99.3%
CDS Percentage 94.16%
Ka/Ks Ratio 0.01118 (Ka = 0.0032, Ks = 0.2834)

Ddx39b ENSMUSG00000019432 (Mouse)

Gene Details

DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000133428, Mouse)

Protein Percentage 99.3%
CDS Percentage 91.43%
Ka/Ks Ratio 0.00577 (Ka = 0.0031, Ks = 0.5384)

Ddx39b ENSRNOG00000000841 (Rat)

Gene Details

DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B (Ddx39b), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000001115, Rat)

Protein Percentage 99.3%
CDS Percentage 90.73%
Ka/Ks Ratio 0.00521 (Ka = 0.0031, Ks = 0.5992)

Genome Location

Sequence Coding sequence

Length: 1482 bp    Location: 24657979..24667225   Strand: +
>XM_004847024.1
ATGGATTGCACAGGATTTCTTAAGCTACGGAAGGCGGGTACTGAGGAGGGAGGTGGAGAGCTGTGGGAGCTCTTCTGTCAGAAGTGTTTTCCTTTTCCTTTGCTTTCCTCGAGCCCTTCCTCTTCCTCCTTGTTTCCATCTGTTCTGGGAGAGCTCTTCCAAGATCCCTCCCCTTCTCCCTCTGCCGGCCCAGTTATGGCAGAGAATGATGTGGACAATGAGCTCTTGGACTATGAAGATGACGAGGTGGAGACAGCGGCTGGGGCAGAGGGGGCTGAGGCCCCTGCCAAGAAGGATGTCAAGGGCTCCTATGTCTCCATCCACAGCTCTGGCTTCCGTGACTTTCTGCTCAAGCCAGAGTTGCTCCGCGCCATCGTTGACTGTGGCTTTGAGCATCCCTCAGAAGTCCAGCATGAGTGCATCCCTCAGGCCATTCTAGGAATGGACGTCCTGTGTCAGGCCAAATCAGGCATGGGAAAGACAGCAGTGTTTGTCTTGGCCACACTGCAGCAGCTGGAGCCAGTTACCGGACAGGTTTCTGTGCTGGTGATGTGTCACACCAGGGAGTTGGCTTTTCAGATCAGCAAGGAGTATGAGCGCTTCTCCAAATACATGCCCAATGTCAAGGTCGCGGTGTTTTTTGGTGGTCTGTCTATCAAGAAGGACGAGGAGGTGCTGAAGAAGAACTGCCCGCACATCGTCGTGGGGACTCCTGGCCGCATTCTCGCCCTGGCTCGAAATAAGAGCCTCAACCTCAAACATATTAAACACTTCATCCTGGATGAGTGCGACAAGATGCTTGAACAGCTCGACATGCGTCGGGATGTCCAGGAAATTTTTCGCATGACCCCCCATGAGAAGCAGGTCATGATGTTCAGTGCCACCTTGGGCAAAGAGATTCGTCCAGTCTGCCGCAAGTTCATGCAAGATCCAATGGAGATCTTCGTGGACGATGAGACGAAGTTGACGCTGCACGGGTTGCAGCAGTACTACGTGAAACTGAAGGACAATGAGAAGAACCGGAAGCTCTTTGACCTTCTGGATGTCCTTGAGTTCAACCAGGTGGTGATCTTTGTGAAGTCCGTGCAGCGGTGCATCGCCCTGGCCCAGCTCCTGGTGGAGCAGAACTTCCCCGCCATCGCCATCCACCGTGGGATGCCCCAGGAAGAGAGGCTTTCTCGGTATCAGCAGTTTAAAGATTTTCAGCGACGAATTCTTGTGGCTACCAACCTGTTCGGCCGCGGCATGGACATCGAGCGGGTGAACATCGCCTTTAACTATGACATGCCCGAGGACTCTGACACCTACCTGCATCGGGTGGCCAGAGCAGGCCGGTTTGGCACCAAGGGCTTGGCTATCACGTTTGTGTCGGATGAGAATGATGCCAAGATACTGAACGATGTGCAGGACCGCTTTGAGGTCAATATCAGTGAGCTGCCTGACGAGATAGACATCTCCTCCTACATTGAACAGACGCGGTAG

Related Sequences

XP_004847081.1 Protein

Ddx39b PREDICTED: spliceosome RNA helicase Ddx39b isoform X3 [Heterocephalus glaber]

Length: 493 aa      View alignments
>XP_004847081.1
MDCTGFLKLRKAGTEEGGGELWELFCQKCFPFPLLSSSPSSSSLFPSVLGELFQDPSPSPSAGPVMAENDVDNELLDYEDDEVETAAGAEGAEAPAKKDVKGSYVSIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLGKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDEIDISSYIEQTR