Details from NCBI annotation

Gene Symbol Lta
Gene Name lymphotoxin alpha (TNF superfamily, member 1)
Entrez Gene ID 101718783

Database interlinks

Part of NW_004624754.1 (Scaffold)

For more information consult the page for NW_004624754.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

LTA ENSCPOG00000002340 (Guinea pig)

Gene Details

lymphotoxin alpha

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000002126, Guinea pig)

Protein Percentage 66.67%
CDS Percentage 78.12%
Ka/Ks Ratio 0.41376 (Ka = 0.2231, Ks = 0.5392)

LTA ENSG00000226979 (Human)

Gene Details

lymphotoxin alpha

External Links

Gene Match (Ensembl Protein ID: ENSP00000403495, Human)

Protein Percentage 64.65%
CDS Percentage 79.12%
Ka/Ks Ratio 0.64106 (Ka = 0.2407, Ks = 0.3755)

Lta ENSMUSG00000024402 (Mouse)

Gene Details

lymphotoxin A

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000025266, Mouse)

Protein Percentage 63.64%
CDS Percentage 74.92%
Ka/Ks Ratio 0.29167 (Ka = 0.2361, Ks = 0.8095)

Lta ENSRNOG00000000838 (Rat)

Gene Details

lymphotoxin alpha (Lta), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000001111, Rat)

Protein Percentage 65.82%
CDS Percentage 78.23%
Ka/Ks Ratio 0.41102 (Ka = 0.2156, Ks = 0.5247)

Genome Location

Sequence Coding sequence

Length: 609 bp    Location: 24628182..24627318   Strand: -
>XM_004847018.1
ATGTCACCACCTGGACGTCTCCACCTCCCGAGGGTGCGTGGCGCCCCCCTCCTCTTCCTCCTGGGGCTGCTGCTGGCCCTGCTGCCGCCTGGGGCCCAGGGACTCCCTGGCACTGGCCTCCCGCCCTCAGCTGCCCGGATGGTCAACCAACCCTCCTACGGCCCCCTCAAACCTGCTGCTCACCTCATTGGAGACTCCGGCACACGGGACTCGCTGCGCTGGAGAGTGGGCAGGGACATGGCCTTCCTCCGTGGCTTCTCTTTCAGCAACGATTCTCTCCTGATCCCCGCCAGTGGCCTCTACTTTGTCTACTCCCAGGTGGTCTTCTCTGGGCTGAGCTGCTCTCTCACGTCCACGCCCAACTATCTCTACCTGACCCACGAGGTCAGGCTCCTCACCTCTCAGTACGGCTCCCCTCTGACTCTGCTCAGCACCCAGAAGTCCCAGAAGTCTGTCTGCCCAGGGCCACAGGACCCCTGGGTGCGCTCCATGTACCAGGGAGCTGTGTTTCTGCTCAGACAGGGGGACCGGCTGTTCACCTACACAGAGGGCATCCACCACCTGCTCTTAAGCCCCAGTACTGTCTTCTTTGGAGCTTTTGCTGTGTAG

Related Sequences

XP_004847075.1 Protein

Lta PREDICTED: lymphotoxin-alpha [Heterocephalus glaber]

Length: 202 aa      View alignments
>XP_004847075.1
MSPPGRLHLPRVRGAPLLFLLGLLLALLPPGAQGLPGTGLPPSAARMVNQPSYGPLKPAAHLIGDSGTRDSLRWRVGRDMAFLRGFSFSNDSLLIPASGLYFVYSQVVFSGLSCSLTSTPNYLYLTHEVRLLTSQYGSPLTLLSTQKSQKSVCPGPQDPWVRSMYQGAVFLLRQGDRLFTYTEGIHHLLLSPSTVFFGAFAV