Sequence details NCBI ID: XM_004846896.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Prrt1
Gene Name proline-rich transmembrane protein 1, transcript variant X2
Entrez Gene ID 101713326

Database interlinks

Part of NW_004624754.1 (Scaffold)

For more information consult the page for NW_004624754.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

PRRT1 ENSG00000204314 (Human)

Gene Details

proline-rich transmembrane protein 1

External Links

Gene Match (Ensembl Protein ID: ENSP00000211413, Human)

Protein Percentage 95.41%
CDS Percentage 89.51%
Ka/Ks Ratio 0.03264 (Ka = 0.0222, Ks = 0.6805)

Prrt1 ENSMUSG00000015476 (Mouse)

Gene Details

proline-rich transmembrane protein 1

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000015620, Mouse)

Protein Percentage 93.77%
CDS Percentage 86.34%
Ka/Ks Ratio 0.02641 (Ka = 0.031, Ks = 1.1727)

Prrt1 ENSRNOG00000000433 (Rat)

Gene Details

proline-rich transmembrane protein 1 (Prrt1), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000000495, Rat)

Protein Percentage 93.44%
CDS Percentage 85.25%
Ka/Ks Ratio 0.02816 (Ka = 0.0344, Ks = 1.2231)

Genome Location

Sequence Coding sequence

Length: 918 bp    Location: 24165315..24168641   Strand: +
Raw sequence   
>XM_004846896.1
ATGTCAGCGGAAAAGTCAGGCCTCCCGGACTCCGTCCCTCACACTTCGCCGCCGCCCTACAATGCCCCCCAGCCCCCGGCCGAAGCGCCCGCCCCGCCCCCACAAGCCGCCCCCTCCTCGCACCAGCACCACCAGCACCACCACCACCAGGCCGGCACCGCCACGCTCCCGCGCCTCGGGGCAGGCGGCCTGGCCTCCTCCGCGGCCACGGCCCAGCGCGGCCCCTCGTCCTCCGCCACGCTCCCGAGGCCCCCCCACCACGCCACGCCCGGCCCGGCCGCCGGGGCGCCCCCACCCGGTTGCGCCACCCTGCCCCGAATGCCCCCCGACCCGTACCTGCAGGAGACCCGCTTCGAGGGCGCCCTCCCCCCGCCGCCCGCCTCGGCCGCCCCGCCGCCGCCTGCGCCCGCCTCGGCCACCCAGGCTCCGGGCTTCGTGGTGCCCACGCACGCGGGGGCGCTGGGCACGCTGCCGCTGGGGGGCTACGTGGCGCCCGGATATCCCCTGCAGCTGCAACCCTGCACAGCCTACGTGCCGGTCTACCCGGTGGGCACGCCCTACGCAGGCGGGACCCCGGGGGGCACTGGGGTGACCTCCACTCTGCCCCCGCCGCCCCAGGGCCCGGGGCTGGCCCTGCTGGAGCCGAGGCGCCCGCCGCACGACTACATGCCCATCGCAGTGCTGACCACCATCTGCTGCTTCTGGCCCACGGGGATCATCGCCATCTTCAAGGCGGTGCAGGTGCGCACAGCCCTGGCCCGCGGGGACATGGTGTCCGCCGAGATCGCGTCACGCGAGGCCCGGAACTTCTCCTTCATCTCCCTGGCCGTGGGCATCGCAGCCATGGTGCTCTGTACCATCCTCACCGTCGTCATCATCATCGCCGCGCAGCACCACGAGAACTACTGGGATCCCTGA

Related Sequences

XP_004846953.1 Protein

Prrt1 PREDICTED: proline-rich transmembrane protein 1 isoform X2 [Heterocephalus glaber]

Length: 305 aa      
>XP_004846953.1
MSAEKSGLPDSVPHTSPPPYNAPQPPAEAPAPPPQAAPSSHQHHQHHHHQAGTATLPRLGAGGLASSAATAQRGPSSSATLPRPPHHATPGPAAGAPPPGCATLPRMPPDPYLQETRFEGALPPPPASAAPPPPAPASATQAPGFVVPTHAGALGTLPLGGYVAPGYPLQLQPCTAYVPVYPVGTPYAGGTPGGTGVTSTLPPPPQGPGLALLEPRRPPHDYMPIAVLTTICCFWPTGIIAIFKAVQVRTALARGDMVSAEIASREARNFSFISLAVGIAAMVLCTILTVVIIIAAQHHENYWDP