Sequence details NCBI ID: XM_004846838.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Col11a2
Gene Name collagen, type XI, alpha 2, transcript variant X2
Entrez Gene ID 101726497

Database interlinks

Part of NW_004624754.1 (Scaffold)

For more information consult the page for NW_004624754.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

COL11A2 ENSCPOG00000020466 (Guinea pig)

Gene Details

collagen, type XI, alpha 2

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000016937, Guinea pig)

Protein Percentage 92.54%
CDS Percentage 88.81%
Ka/Ks Ratio 0.15966 (Ka = 0.0484, Ks = 0.3033)

COL11A2 ENSG00000204248 (Human)

Gene Details

collagen, type XI, alpha 2

External Links

Gene Match (Ensembl Protein ID: ENSP00000363840, Human)

Protein Percentage 94.06%
CDS Percentage 88.38%
Ka/Ks Ratio 0.09774 (Ka = 0.0348, Ks = 0.3562)

Col11a2 ENSMUSG00000024330 (Mouse)

Gene Details

collagen, type XI, alpha 2

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000084772, Mouse)

Protein Percentage 92.48%
CDS Percentage 86.32%
Ka/Ks Ratio 0.09632 (Ka = 0.0439, Ks = 0.4563)

Col11a2 ENSRNOG00000000463 (Rat)

Gene Details

collagen, type XI, alpha 2 (Col11a2), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000048846, Rat)

Protein Percentage 92.95%
CDS Percentage 85.71%
Ka/Ks Ratio 0.08275 (Ka = 0.0422, Ks = 0.5099)

Genome Location

Sequence Coding sequence

Length: 5211 bp    Location: 23614570..23640489   Strand: +
Raw sequence   
>XM_004846838.1
ATGGAGCGGGGCAGCCACTGCCGCCGCCTCCTCCTGCTCCTCCCGCTGGCGCTGGGGCTGAGCGGCGCCCCGGGCCGGGCAGGTGCGCCCCCTGTGGACCTGCTCCGGGCCCTGCGGTTCCCCTCCCTCCCTGATGGAGTCCGGAGGGCGAGAGGCGTCTGTCCAGCTGATGTGGCCTACCGAGTGTCTCGGCCTGCCCAGCTCAGCGCACCTACCCGCCAGCTCTTCCCGGGAGGCTTTCCCAAAGACTTCTCTCTGCTGACTGTTGTCCGGACCCGGCCTGGCCTCCAGGTGCCCCTCCTGACTCTCTACAGTGACCAGGGTGTCCAGCAGCTGGGCCTGGAGCTTGGCCGACCAGTCCGCTTCCTGTATGAGGACCAGACCGGACGGCCCCAGCCCCCGGCTCAGCCGGTCTTCTGGGGCCTCAGCCTTGCGGACGGCAAGTGGCACCGGGTGGCCGTGGCTGTGAAGGGGCAATCTGTCACCCTCATCGTTGACTGCAAGAAGCGAGTCACCCGGCCCCTTCCCCGAAGCGCTCGCCCGGTGTTGGACACCCGAGGGGTGGTCATCTTCGGGGCCCGTGTCCTCGATGAAGAAGTCTTTGAGGGCGATGTGCAGAAGCTTGTCGTTGTTCCTGGAGTCCAAGCTGCCTATGAGTCCTGTGAACAGAAGGATCTGGAATGTGAGGGCAGCCAGCGGGAGAGACCTCGGAACAAACAGTCGCACAGAGCCCAGAGATCGCCAAAGCAGCCACCGTCAAGGCTTCACAGACCGCAAAACCAGGAACCCCAGCGACAGCCCCCCGAGCCTCTCCACCTCGACTACGAGCCTCCCTACGACGCCGAGAAGACCAGGGGCACCGCCCCTGACGGTCAGTACCCCACCCCTGGTGAAGAGGAAGGAGCCCCGGAGTCAAGCCCCTTGCCGCTCCCGGAGGAGGAGCGGACAGATCTCCAGGTCCCCCCAACAGCCGAAGGGTTCCTGGCAGAGGAACATGGGGAGGGTGGCACAAACGCCCCAGCAGGGCTCTACGACTACACCTATGGCTATGGGGATGACTATCGTGAGGAGACGGAGCTTGGCCCTGCCCTCTCTGCGGAGACTGCCCACTCGGGAGCCGTTGCCCGTGGACCCCGGGGGCTGAAGGGAGAGAAGGGAGAGCCTGCCGTGCTGGAACCTGGCATGCTCGTGGAGGGACCCCCTGGCCCAGAAGGCCCTGCGGGATTGACTGGTCCCCCTGGTATCCAGGGGAACCCAGGCCCAGTTGGAGACCCTGGAGAGAGGGGACCCCCTGGCCGAGCAGGGCTCCCTGGATCTGATGGTGCCCCTGGCCCTCCTGGCACCTCCCTCATGCTCCCATTCCGGTTTGGCAGCAGTGGGGGTGACAAGGGCCCTGTGCTGGCGGCCCAGGAGGCACAGGCCCAGGCAATCCTGCAGCAGGCACGGCTGGCGCTCCGTGGACCCCCTGGCCCGATGGGATACACAGGCCGCCCTGGGCCCTTGGGACAGCCCGGGAGCCCTGGCTTGAAAGGAGAGCTGGGAGACCTAGGGCCCCAGGGCCCCAGAGGACCTCAGGGACTCTCAGGGCCCCCCGGCAAGGCTGGACGGAGGGGCCGAGCGGGTGCTGACGGAGCCCGAGGGATGCCGGGAGAACCTGGGGTGAAGGGTGATCGAGGTTTTGACGGCCTCCCAGGGCTACCTGGGGAGAAGGGGCACAGGGGTGACACTGGCGCCCAGGGCCTTCCTGGGCCCCCTGGAGAGGATGGAGAGCAGGGAGATGATGGGGAGACCGGGCCCCGGGGGCTGCCTGGAGAGTCGGGACCTCGAGGGCTCCTTGGTCCCAAAGGCCCCCCTGGAATTCCTGGGTCCCCGGGAGTCCGAGGCTTGGACGGGCCACACGGGCCCAAAGGCAGCTTGGGACCCCAGGGAGAGCCAGGACCTCCCGGACAGCAGGGCACCCCTGGGACCCAGGGTCTCCCTGGGCCTCAGGGTGCCGTTGGCCCTCGTGGTGAGAAGGGGCCTCAAGGGAAGGCAGGGCTCCCCGGCATGCCTGGCTCAGACGGACTCCCGGGTCATCCCGGGAAGGAAGGTCCTCCTGGAACCAAAGGAAACCAGGGCCCGTCTGGACCTCAGGGTCCTTTAGGATACCCCGGACCTCGAGGTGTCAAGGGTGTGGATGGAATTCGGGGTCTGAAGGGTCACAAAGGTGAAAAGGGCGAGGATGGTTTTTCCGGGTTCAAAGGTGACGTGGGCGTGAAAGGTGACAGGGGTGAGGTCGGAGTTCCTGGCTCCCGGGGAGAAGATGGCCCCGAGGGGCCGAAGGGACGCACGGGACCCACTGGAGACCCTGGGCCCCCTGGACTCATGGGCGAGAAGGGCAAGCTGGGTGTCCCTGGCCTGCCTGGCTACCCTGGACGCCAGGGTCCCAAGGGCTCCCTGGGGTTTCCTGGCTTCCCTGGAGCCAGTGGAGAGAAGGGAGCCCGGGGCCTGTCAGGGAAAGCAGGACCTCGCGGGGAACGAGGGCCCACGGGCCCGCGGGGCCAGCGGGGACCCCGAGGAGCCACTGGCAAGTCTGGAGCTAAGGGAACCTCAGGAGGTGATGGCCCCCACGGGCCCCCCGGAGAGAGGGGCCTCCCTGGACCTCAGGGCCCCAGTGGCTTCCCTGGCCCCAAAGGCCCCCCGGGCCCCCCGGGGAAGGATGGGCTGCCCGGGCACCCAGGCCAGAGAGGAGAAGTGGGCTTCCAAGGGAAGACAGGCCCTCCTGGGCCCCCTGGAGTGGTGGGACCCCAGGGAGCAGCAGGGGAGAGTGGTCCCATGGGGGAGAGAGGTCACCCAGGGCCCCCGGGACCTCCCGGAGAGCAGGGCCTGCCTGGCCCGGCTGGAAAAGAAGGCACAAAGGGTGACCCTGGTCCCCCCGGGGCTCCGGGGAAAGATGGCCCTGCTGGTCTGAGGGGCTTCCCAGGGGAGAGAGGCCTCCCGGGCACTGCTGGTGGGGCTGGTTTGAAGGGGAATGAAGGTCCAGCTGGCCCTCCCGGCCCCGCAGGCTCCCCCGGGGAGCGAGGTGGAGCAGGATCAGGGGGGCCCATCGGTCCCCCAGGGCGCCCAGGCCCCCAGGGTCCCCCAGGAGCAGCGGGTGAGAAAGGCGTCCCGGGGGAGAAGGGCCCTGTTGGTCCCACCGGCCGCGATGGGGTGCAGGGTCCTGTGGGACTTCCTGGCCCTGCTGGACCCCCTGGTGTGGCGGGAGACGATGGTGACAAGGGTGAGGTGGGAGACCCCGGACAGAAGGGCTCCAAGGGGAACAAGGGTGAACACGGCCCTCCTGGCCCTCCTGGCCCCATCGGTCCTGTGGGGCAGCCCGGAGCCGCGGGAGCTGATGGGGAGCCTGGAGCTAGGGGGCCCCAGGGACACTTTGGAGCCAAAGGTGATGAAGGGACAAGAGGATTCAACGGACCCCCAGGACCCATTGGCCTACAGGGCTTGCCAGGCCCCTCTGGGGAGAAAGGAGAAACAGGAGATGTGGGGCCTATGGGACCCCCCGGCCCCCCAGGACCTCGAGGCCCAGCTGGACCCAACGGTGCTGATGGACCCCAAGGCCCCCCCGGAGGTGTTGGCAACCTCGGTCCCCCTGGAGAGAAGGGGGAGCCAGGAGAAGCAGGATCCCCAGGGGTCCAGGGTGAGCCAGGCGTCAAGGGTCTTCGAGGGGAGCGTGGGGAGAAAGGAGAGACAGGGCAGGCGGGAGAGGCTGGGCCACCCGGCCCCAAAGGGCCCGCAGGCGGCGATGGCCCCAAGGGCAGCCCTGGTCCCGTGGGTTTCCCTGGCGACCCCGGCCCCCCTGGAGAAGTCGGCCCTCGGGGCCAGGATGGTGCCAAGGGTGACCGAGGAGAGGACGGCGAGCCAGGCCAGCCCGGCTCCCCTGGTCCCACTGGGGAGAATGGGCCACCTGGACCCCTTGGGAAGCGAGGTCCTGCCGGCACGCCTGGTCCGGAGGGGCGACAGGGAGAGAAGGGAGCCAAGGGGGATCCTGGTGCAGTGGGTGCCCCGGGGAAGACAGGCCCTGTGGGTCCTGCTGGTCCGGCAGGAAAACCCGGCCCTGATGGGCTACGAGGGCTCCCGGGCTCGGTGGGTCAGCAGGGCCGTCCTGGAGCCACAGGCCAGGCTGGGCCCCCGGGTCCTGTGGGACCCCCAGGGCTTCCTGGCCTCCGGGGTGATGCTGGAGCCAAGGGGGAGAAGGGCCACCCAGGTCTCATTGGACTGATTGGCCCCCCTGGAGAGCAAGGGGAGAAGGGTGACCGGGGACTGCCCGGCCCTCAGGGCTCCCCTGGACAGAAGGGAGAGACGGGTGTCACAGGAGCGTCCGGCCCCGTCGGTCCCGGAGGGCCTCCCGGCCTCCCCGGACCTGCTGGCCCCAAAGGAGCCAAAGGAGCCACAGGCCCAGCCGGACCCAAGGGAGAGAAGGGCGCGCAGGGCCCCCCAGGACACCCGGGCCCTCCGGGCGAGGTGATCCAGCCACTGCCCATCCAGATGCCCAAGAAGGTGCGCCGCTCAGTGGACGGCAGCCGCCTGATGCAGGAGGACGAGGCCCTGCCGAGCGGGGGCGCCCCGGGCAGTCCCGGGGGGCTGGAGGAGATCTTCGGCTCGCTGGACTCCCTGCGGGAGGAGATCGAGCAGATGAGGCGGCCGACAGGGACCCAGGCCAGCCCGGCGCGCACCTGCCAGGACCTGAAGCTGTGTCGCCCGGAGCTGCCTGATGGAGAGTACTGGGTGGACCCCAATCAGGGCTGTCCCCGGGATGCCTTCCGGGTCTTCTGCAACTTTACCGCGGGCGGGGAGACGTGTGTGACACCCAGGGATGATGTCACCCAGTTCTCCTACGTGGACTCAGAGGGCTCCCCGGTAGGTGTGGTCCAGCTCACCTTCCTGCGCCTGCTCAGTGTCTCGGCCCACCAGGACGTCTCCTACCCCTGCTCTAAAGCGCCCCTCGACAGCCCCCTGAGACTCCGGGGGGCCAATGAGGATGAGCTGAGCCCCGGGACCAGCCCCTATGTCAAGGAATTCAGAGACGGCTGTCAGACACAGCATGGCCGCAGGGTGCTGGAGGTCCGCACCCCGGTGCTGGAGCAGCTGCCGGTGCTGGATGCCTCCTTCTCAGACCTGGGGGCCCCCCCGAGGCGGGGAGGGGTGCTGCTGGGCCCAGTCTGCTTCATGGGCTAG

Related Sequences

XP_004846895.1 Protein

Col11a2 PREDICTED: collagen alpha-2(XI) chain isoform X2 [Heterocephalus glaber]

Length: 1736 aa      View alignments
>XP_004846895.1
MERGSHCRRLLLLLPLALGLSGAPGRAGAPPVDLLRALRFPSLPDGVRRARGVCPADVAYRVSRPAQLSAPTRQLFPGGFPKDFSLLTVVRTRPGLQVPLLTLYSDQGVQQLGLELGRPVRFLYEDQTGRPQPPAQPVFWGLSLADGKWHRVAVAVKGQSVTLIVDCKKRVTRPLPRSARPVLDTRGVVIFGARVLDEEVFEGDVQKLVVVPGVQAAYESCEQKDLECEGSQRERPRNKQSHRAQRSPKQPPSRLHRPQNQEPQRQPPEPLHLDYEPPYDAEKTRGTAPDGQYPTPGEEEGAPESSPLPLPEEERTDLQVPPTAEGFLAEEHGEGGTNAPAGLYDYTYGYGDDYREETELGPALSAETAHSGAVARGPRGLKGEKGEPAVLEPGMLVEGPPGPEGPAGLTGPPGIQGNPGPVGDPGERGPPGRAGLPGSDGAPGPPGTSLMLPFRFGSSGGDKGPVLAAQEAQAQAILQQARLALRGPPGPMGYTGRPGPLGQPGSPGLKGELGDLGPQGPRGPQGLSGPPGKAGRRGRAGADGARGMPGEPGVKGDRGFDGLPGLPGEKGHRGDTGAQGLPGPPGEDGEQGDDGETGPRGLPGESGPRGLLGPKGPPGIPGSPGVRGLDGPHGPKGSLGPQGEPGPPGQQGTPGTQGLPGPQGAVGPRGEKGPQGKAGLPGMPGSDGLPGHPGKEGPPGTKGNQGPSGPQGPLGYPGPRGVKGVDGIRGLKGHKGEKGEDGFSGFKGDVGVKGDRGEVGVPGSRGEDGPEGPKGRTGPTGDPGPPGLMGEKGKLGVPGLPGYPGRQGPKGSLGFPGFPGASGEKGARGLSGKAGPRGERGPTGPRGQRGPRGATGKSGAKGTSGGDGPHGPPGERGLPGPQGPSGFPGPKGPPGPPGKDGLPGHPGQRGEVGFQGKTGPPGPPGVVGPQGAAGESGPMGERGHPGPPGPPGEQGLPGPAGKEGTKGDPGPPGAPGKDGPAGLRGFPGERGLPGTAGGAGLKGNEGPAGPPGPAGSPGERGGAGSGGPIGPPGRPGPQGPPGAAGEKGVPGEKGPVGPTGRDGVQGPVGLPGPAGPPGVAGDDGDKGEVGDPGQKGSKGNKGEHGPPGPPGPIGPVGQPGAAGADGEPGARGPQGHFGAKGDEGTRGFNGPPGPIGLQGLPGPSGEKGETGDVGPMGPPGPPGPRGPAGPNGADGPQGPPGGVGNLGPPGEKGEPGEAGSPGVQGEPGVKGLRGERGEKGETGQAGEAGPPGPKGPAGGDGPKGSPGPVGFPGDPGPPGEVGPRGQDGAKGDRGEDGEPGQPGSPGPTGENGPPGPLGKRGPAGTPGPEGRQGEKGAKGDPGAVGAPGKTGPVGPAGPAGKPGPDGLRGLPGSVGQQGRPGATGQAGPPGPVGPPGLPGLRGDAGAKGEKGHPGLIGLIGPPGEQGEKGDRGLPGPQGSPGQKGETGVTGASGPVGPGGPPGLPGPAGPKGAKGATGPAGPKGEKGAQGPPGHPGPPGEVIQPLPIQMPKKVRRSVDGSRLMQEDEALPSGGAPGSPGGLEEIFGSLDSLREEIEQMRRPTGTQASPARTCQDLKLCRPELPDGEYWVDPNQGCPRDAFRVFCNFTAGGETCVTPRDDVTQFSYVDSEGSPVGVVQLTFLRLLSVSAHQDVSYPCSKAPLDSPLRLRGANEDELSPGTSPYVKEFRDGCQTQHGRRVLEVRTPVLEQLPVLDASFSDLGAPPRRGGVLLGPVCFMG