Details from NCBI annotation

Gene Symbol Tapbp
Gene Name TAP binding protein (tapasin), transcript variant X3
Entrez Gene ID 101719224

Database interlinks

Part of NW_004624754.1 (Scaffold)

For more information consult the page for NW_004624754.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

TAPBP ENSCPOG00000024169 (Guinea pig)

Gene Details

TAP binding protein (tapasin)

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000020429, Guinea pig)

Protein Percentage 70.93%
CDS Percentage 73.24%
Ka/Ks Ratio 0.30131 (Ka = 0.2453, Ks = 0.8142)

TAPBP ENSG00000231925 (Human)

Gene Details

TAP binding protein (tapasin)

External Links

Gene Match (Ensembl Protein ID: ENSP00000404833, Human)

Protein Percentage 74.58%
CDS Percentage 76.34%
Ka/Ks Ratio 0.23877 (Ka = 0.1843, Ks = 0.772)

Tapbp ENSMUSG00000024308 (Mouse)

Gene Details

TAP binding protein

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000025161, Mouse)

Protein Percentage 73.07%
CDS Percentage 75.73%
Ka/Ks Ratio 0.18855 (Ka = 0.1765, Ks = 0.9358)

Tapbp ENSRNOG00000029500 (Rat)

Gene Details

TAP binding protein (tapasin) (Tapbp), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000045630, Rat)

Protein Percentage 72.8%
CDS Percentage 74.4%
Ka/Ks Ratio 0.18578 (Ka = 0.1907, Ks = 1.0263)

Genome Location

Sequence Coding sequence

Length: 1281 bp    Location: 23513151..23520945   Strand: +
>XM_004846814.1
ATGGAGCCCTTGGGCTTGCTCTTCGCCGTGGCTTTGGGCCTGGCGACCGTGGCCTCGGCCGGACCCGCAGCAATCGAGTGCTGGTTCGTGGAGGATATGGGCAGGGGCGTCCTGGAGAAGAGACCCGCGGCTCTGCTGCTGCGCCGGGGCCCCGGAGGTCCGCCGCCCCGGCCAGACCTGGACCCTAAGCTTTACCTCAGCGTGGACGTGGTGCTTACGGTCCTCACCCACACCCCCGCTCCCCGAGTCCGACTGGGACAGGACGCCGTGCTGGACCTGAGCTTCGCCTACACACCCCCCACCCCCGAGCCTGCCCCCACCCCGGCCCCAGGCCCCCCTCCCTTTGGGCTGGAGTGGCGCCGCCAGCACCAGGGTAAGGGGCACCTGCTCCTGGCTGCGACTCCAGGGCTGGAAGGACAGGTGCCAGCAGCCCAAGAGGGGGCAGTGGCATTCGCTGCTTGGGACGACGATGAGCCTTGGGGCCCGTGGACGGGGAACGGCACCTTCTGGCTGCCCGCGGTGCGACCCTTTCAGGAAGGCACCTACCTGGCCACGGTGCACCTGCCGTACCTGCAAGGACAGGTCGCCCTGCAGCTCACCGTGCACCAGCCCCCCAAAGTGTCACTGAGGCCGGCTCCCCTTGTTTGGGCTGCCCCCGGGGAGGCCCCCCCAGAGCTGCTCTGCCTCGTGTCCCGCTTCTACCCTCCTGAGGGCCTGGAGGTGGAGTGGGAGATCCGAGGGGGCCCAGGGGGTGGCTTCCAGAAGGCCAAGGGGGAGAGGTGGCTCTCAGCCCTTCACCACCACTCAGACGGCTCTGTCAGCCTCTCGGGGCACTTCCGGCCACACCCTGTCACCGCTGAGCACCATGGCGCGCGCTATGCCTGTCGTGTCCACCACCCCAGCCTGCCCGCCGCGGGACACAGCGCCATGGTCACGGTGGAAGTGGCAGGCCTCTCCGGGCCCTCGCTGGAGGACGGTGTAGGCCTCTTCCTGTCTGCCTTTTTGCTCCTCGGACTCATCAAGGCTCTGGGCTGGGTTGCTGCCTACCTGAGCATGTGCAGGGATCCAAAGGAGAAGGTAACAGCCTTCAGTTCCCCTGACCTGTCCCTTCTTCTTTCATTCCCTGTCCCCAACTCATCCCTCATGGGTGTGGGGGGAGGAATCAGACTTGTAATTCATGTGGATCTGGGTCAAGTCTTCCCCTGTATCCTAACTGTAGTGTCCCCCAAACATGCCACTACTGTACATCTGTTCCCTGGATGTGAGCATTTTAAAAAATGA

Related Sequences

XP_004846871.1 Protein

Tapbp PREDICTED: tapasin isoform X3 [Heterocephalus glaber]

Length: 426 aa      View alignments
>XP_004846871.1
MEPLGLLFAVALGLATVASAGPAAIECWFVEDMGRGVLEKRPAALLLRRGPGGPPPRPDLDPKLYLSVDVVLTVLTHTPAPRVRLGQDAVLDLSFAYTPPTPEPAPTPAPGPPPFGLEWRRQHQGKGHLLLAATPGLEGQVPAAQEGAVAFAAWDDDEPWGPWTGNGTFWLPAVRPFQEGTYLATVHLPYLQGQVALQLTVHQPPKVSLRPAPLVWAAPGEAPPELLCLVSRFYPPEGLEVEWEIRGGPGGGFQKAKGERWLSALHHHSDGSVSLSGHFRPHPVTAEHHGARYACRVHHPSLPAAGHSAMVTVEVAGLSGPSLEDGVGLFLSAFLLLGLIKALGWVAAYLSMCRDPKEKVTAFSSPDLSLLLSFPVPNSSLMGVGGGIRLVIHVDLGQVFPCILTVVSPKHATTVHLFPGCEHFKK