Details from NCBI annotation

Gene Symbol Pacsin1
Gene Name protein kinase C and casein kinase substrate in neurons 1, transcript variant X5
Entrez Gene ID 101699093

Database interlinks

Part of NW_004624754.1 (Scaffold)

For more information consult the page for NW_004624754.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

PACSIN1 ENSCPOG00000012000 (Guinea pig)

Gene Details

protein kinase C and casein kinase substrate in neurons 1

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000010798, Guinea pig)

Protein Percentage 97.52%
CDS Percentage 94.82%
Ka/Ks Ratio 0.02029 (Ka = 0.0105, Ks = 0.5179)

PACSIN1 ENSG00000124507 (Human)

Gene Details

protein kinase C and casein kinase substrate in neurons 1

External Links

Gene Match (Ensembl Protein ID: ENSP00000439639, Human)

Protein Percentage 95.5%
CDS Percentage 90.62%
Ka/Ks Ratio 0.01444 (Ka = 0.0192, Ks = 1.3327)

Pacsin1 ENSMUSG00000040276 (Mouse)

Gene Details

protein kinase C and casein kinase substrate in neurons 1

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000044168, Mouse)

Protein Percentage 96.37%
CDS Percentage 89.19%
Ka/Ks Ratio 0.01141 (Ka = 0.0166, Ks = 1.4547)

Pacsin1 ENSRNOG00000025083 (Rat)

Gene Details

protein kinase C and casein kinase substrate in neurons protein 1

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000036285, Rat)

Protein Percentage 93.42%
CDS Percentage 87.15%
Ka/Ks Ratio 0.0173 (Ka = 0.0325, Ks = 1.8777)

Genome Location

Sequence Coding sequence

Length: 1335 bp    Location: 22735095..22723474   Strand: -
>XM_004846744.1
ATGTCCGGCTCCTACGATGAGGCCTCGCTGGCTCCGGAGGAGACCACAGACAGCTTCTGGGAGGTGGGGAACTACAAGCGCACGGTGAAGCGCATTGACGACGGCCACCGCCTGTGCAACGACCTGATGAGCTGCGTGCAGGAGCGCGCCAAGATCGAGAAGGCGTACGCGCAGCAGCTCACCGACTGGGCCAAGCGCTGGCGCCAGCTCATCGAGAAAGGCCCGCAGTACGGCAGCCTGGAGCGGGCCTGGGGCGCCATCATGACAGAGGCGGATAAGGTGAGCGAGCTGCACCAGGAGGTGAAGAACAGCCTGCTGAGTGAGGACCTGGAGAAGGTCAAGAACTGGCAGAAGGACGCCTACCACAAGCAGATCATGGGCGGCTTCAAGGAGACCAAGGAGGCCGAGGACGGCTTCCGAAAGGCCCAGAAGCCCTGGGCCAAGAAGATGAAGGAGCTGGAGGCAGCCAAGAAGGCGTACCACCTGGCCTGCAAGGAGGAGAAGCTGGCCCTGACGAGGGAGATGAACAGCAAGGGCGAGCAGTCGGTCACGCCGGAGCAGCAGAAGAAGCTGCAGGACAAAGTGGACAAATGCAAACAGGATGTGCAGAAGACTCAGGAGAAGTACGAGAAGGTGCTGGACGACGTGGGCAAGAACACGCCCCAGTACATGGAGAGCATGGAGCAGGTGTTTGAGCAGTGCCAGCAGTTTGAGGAAAAGCGGCTGGTCTTCCTCAAGGAGGTCCTGCTGGACATCAAGCGTCACCTCAACCTGGCGGAGAACAGCAGCTACATGCATGTGTACCGCGAGCTGGAGCAGGCCATCCGCGGGGCCGACGCCCAGGAGGACCTCCGATGGTTCCGAAGCACCAGCGGCCCCGGCATGCCCATGAACTGGCCCCAGTTCGAGGAGTGGAACCCAGATCTGCCCCACACCACCGCCAAGAAGGAAAAGCAGCCCAAGAAGGTGGAGGGGGCGGCGCTGAGCAACGCCGCCGGGGCGGTGGAGTGCACGTCCCAGGCGGGGGACCGCGGCAGCGTCAGCAGCTACGACAGAGGTCAGCCTTACGCCACAGAGTGGTCGGACGACGAGAGCGGAAACCCGTTTGGGGGCAATGAGGCCAACGGAGGCGCCAACCCCTTCGAAGACGACGCCAAGGGGGTCCGAGTGCGAGCGCTGTACGACTATGACGGCCAGGAACAGGATGAGCTCAGCTTCAAGGCCGGAGATGAGCTCACCAAGCTGGGCGAAGAGGACGAGCAGGGCTGGTGCCGCGGGCGGCTGGACAGCGGCCAGCTGGGCCTCTACCCCGCCAACTACGTGGAGGCCATCTAG

Related Sequences

XP_004846801.1 Protein

Pacsin1 PREDICTED: protein kinase C and casein kinase substrate in neurons protein 1 isoform X5 [Heterocephalus glaber]

Length: 444 aa      View alignments
>XP_004846801.1
MSGSYDEASLAPEETTDSFWEVGNYKRTVKRIDDGHRLCNDLMSCVQERAKIEKAYAQQLTDWAKRWRQLIEKGPQYGSLERAWGAIMTEADKVSELHQEVKNSLLSEDLEKVKNWQKDAYHKQIMGGFKETKEAEDGFRKAQKPWAKKMKELEAAKKAYHLACKEEKLALTREMNSKGEQSVTPEQQKKLQDKVDKCKQDVQKTQEKYEKVLDDVGKNTPQYMESMEQVFEQCQQFEEKRLVFLKEVLLDIKRHLNLAENSSYMHVYRELEQAIRGADAQEDLRWFRSTSGPGMPMNWPQFEEWNPDLPHTTAKKEKQPKKVEGAALSNAAGAVECTSQAGDRGSVSSYDRGQPYATEWSDDESGNPFGGNEANGGANPFEDDAKGVRVRALYDYDGQEQDELSFKAGDELTKLGEEDEQGWCRGRLDSGQLGLYPANYVEAI