Sequence details NCBI ID: XM_004846738.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Spdef
Gene Name SAM pointed domain containing ets transcription factor, transcript variant X1
Entrez Gene ID 101698462

Database interlinks

Part of NW_004624754.1 (Scaffold)

For more information consult the page for NW_004624754.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

SPDEF ENSCPOG00000020697 (Guinea pig)

Gene Details

SAM pointed domain containing ETS transcription factor

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000019665, Guinea pig)

Protein Percentage 89.73%
CDS Percentage 90.03%
Ka/Ks Ratio 0.05937 (Ka = 0.0473, Ks = 0.7971)

SPDEF ENSG00000124664 (Human)

Gene Details

SAM pointed domain containing ETS transcription factor

External Links

Gene Match (Ensembl Protein ID: ENSP00000363149, Human)

Protein Percentage 86.71%
CDS Percentage 87.11%
Ka/Ks Ratio 0.054 (Ka = 0.0608, Ks = 1.1252)

Spdef ENSMUSG00000024215 (Mouse)

Gene Details

SAM pointed domain containing ets transcription factor

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000110520, Mouse)

Protein Percentage 82.24%
CDS Percentage 81.93%
Ka/Ks Ratio 0.06036 (Ka = 0.0897, Ks = 1.4863)

Spdef ENSRNOG00000000491 (Rat)

Gene Details

SAM pointed domain containing ets transcription factor (Spdef), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000000583, Rat)

Protein Percentage 83.8%
CDS Percentage 83.39%
Ka/Ks Ratio 0.05129 (Ka = 0.0783, Ks = 1.5275)

Genome Location

Sequence Coding sequence

Length: 1002 bp    Location: 22714432..22720504   Strand: +
Raw sequence   
>XM_004846738.1
ATGGGCAGTGCCAGCCCGGGCCTGAACGCCGCGCCCCCTGGCTGCCTGCTGCTGCCCCCGGACACAGTGCTGCGCTCGGGCCTGGAGAAGGTGGCGGGGCCTGAGAAGGGGGACTGGAGCCCCAGCCCGCCTGCCACACCCACCTCCGAGCAGGCCCTGCCCACCTTCTACCTCTCTGACTTCGACATGTTGTACACTGAGGACGGCACCTGGGTGGCCAAGGGCCCTGAGGCCAGCGGCCGGGAGGAGCCATCTGAGGAGCCCGAGCAGTGCCCAGTCATCGACAGCCAGGCCCCGGGGGGCAGCCTGGACCTGGTGCCGGCCGGGCTGGCGCTGGAGGAGCACTCGCTGGAGCAGGTGCAGTCCATGGTGGTGGGCGAGGTGCTCAAGGACATCGAGACGGCCTGCAAGCTGCTCAACATCGCCGCAGACCCTGTGGACTGGAGCCCCAGCAATGTACAGAAGTGGCTGCTATGGACCGAGCACCAGTACCGGCTGCCGCCTGTGGGCACGGCCTTCCAGGAGCTGGGGGGCAGGGAGCTGTGCTGCATGTCGGAGGAGCAGTTCCGCCAGCGCTCACCCCTGGGCGGGGAAGTGCTGCATGCGCACCTGGACATCTGGAAATCAGCGGCCTGGATGAAGGAGAGGACCTCGCCCAGGGCCATCCACTGCTGCGCCTCCACCAGCGAGGACAGCTGGGCCCACAGCGAGGTGGACTCGTCCTGCTCAGGGCAGCCTATCCACCTGTGGCAGTTCCTGCGCGAGCTGCTGCTCAAGCCTCACAGCTATGGGCGCCTCATCCGCTGGCTCAACAAGGACAAGGGCATCTTCAAAATCGAGGACTCTGCCCAGGTGGCCCGGCTGTGGGGCATCCGGAAGAACCGGCCTGCCATGAACTACGACAAGCTGAGCCGCTCCATCCGCCAGTATTACAAGAAGGGGATCATCCGAAAGCCGGACATCTCCCAGCGCCTGGTCTACCAGTTCGTGCACCCCATCTGA

Related Sequences

XP_004846795.1 Protein

Spdef PREDICTED: SAM pointed domain-containing Ets transcription factor isoform X1 [Heterocephalus glaber]

Length: 333 aa      View alignments
>XP_004846795.1
MGSASPGLNAAPPGCLLLPPDTVLRSGLEKVAGPEKGDWSPSPPATPTSEQALPTFYLSDFDMLYTEDGTWVAKGPEASGREEPSEEPEQCPVIDSQAPGGSLDLVPAGLALEEHSLEQVQSMVVGEVLKDIETACKLLNIAADPVDWSPSNVQKWLLWTEHQYRLPPVGTAFQELGGRELCCMSEEQFRQRSPLGGEVLHAHLDIWKSAAWMKERTSPRAIHCCASTSEDSWAHSEVDSSCSGQPIHLWQFLRELLLKPHSYGRLIRWLNKDKGIFKIEDSAQVARLWGIRKNRPAMNYDKLSRSIRQYYKKGIIRKPDISQRLVYQFVHPI