Sequence details NCBI ID: XM_004846566.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Prph2
Gene Name peripherin 2 (retinal degeneration, slow), transcript variant X2
Entrez Gene ID 101702401

Database interlinks

Part of NW_004624754.1 (Scaffold)

For more information consult the page for NW_004624754.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

PRPH2 ENSCPOG00000008060 (Guinea pig)

Gene Details

peripherin 2 (retinal degeneration, slow)

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000020574, Guinea pig)

Protein Percentage 89.6%
CDS Percentage 91.81%
Ka/Ks Ratio 0.09304 (Ka = 0.0446, Ks = 0.4798)

PRPH2 ENSG00000112619 (Human)

Gene Details

peripherin 2 (retinal degeneration, slow)

External Links

Gene Match (Ensembl Protein ID: ENSP00000230381, Human)

Protein Percentage 85.55%
CDS Percentage 86.22%
Ka/Ks Ratio 0.0715 (Ka = 0.0647, Ks = 0.9053)

Prph2 ENSMUSG00000023978 (Mouse)

Gene Details

peripherin 2

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000024773, Mouse)

Protein Percentage 87.57%
CDS Percentage 85.55%
Ka/Ks Ratio 0.04585 (Ka = 0.057, Ks = 1.2429)

Genome Location

Sequence Coding sequence

Length: 1041 bp    Location: 16685524..16699119   Strand: +
Raw sequence   
>XM_004846566.1
ATGGCGCTACTCAAAGTCAAGTTTGACCAGAAGAAGCGGGTCAAGTTGGCACAGGGGCTCTGGCTCATGAACTGGCTCTCTGTTTTGGCTGGCATCATCCTCTTCAGCATGGGGCTCTTTCTGAAGATTGAGCTCCGGAAGAGGAGTGAAGTGATGAACAATGCTGAGAGCCACTTTGTGCCCAACTGCCTGATCGGGGTGGGAGTGGTGTCCTGCATCTTCAATTCCCTGGCTGGTAAGATCTGCTACGACACCCTGGATCCCGCCAAGTTCGCCAAGTGGAGGCCCTGGCTGAAGCCCTATCTGGCCATCTGTGTCCTCTTCAACATTATCCTCTTCTTCGTGGCCCTCTGCTGCTTCCTGCTGCAGGGCTCGCTGGAGAGCTCACTGGCCCACGGGCTCAGGAGTGGCATGAAGTACTATCGTGACACGGACACGCCGGGCCGCTGCTTCATGAAGAAGACGATGGACATGCTGCAGATCGAGTTCCAGTGCTGTGGCAACAGCGGCTTCCGGGACTGGTTCGAGATCCAGTGGATCAGCAATCGCTACCTGGACTTTTCCTCCAAAGAAGTCAAAGACCGCATCAAGAGCAACGTGGACGGGCGGTACCTGGTGGATGGTGTGCCCTTCAGCTGCTGCAACCCCAGCTCGCCTCGGCCCTGCATCCAGTACCAGCTCACCAACAACTCTGCACACTACAGCTATGATCACCAGACCGAGGAGCTCAACCTGTGGCTGGGCGGCTGCAGGGACGCCCTGCTGGGCTACTTCAGCAGCCTCATGAGCTCCATGGGTGTCGCCTCGATGATCGTGTGGCTCTTTGAGGTGACCATCACCATCGGCCTGCGCTACCTGCACACGGCGCTGGAGGGCCTGTCCAACCCCGAGGACCCGCACTTCGAGAGCGAAGGCTGGCTGCTGGAGAAGAGCGTGCCTGAGACCTGGAAGGCTTTCCTGGAGAGCCTGAAAAAGCTGGGCAAGGGCAACCAGGTGGAAGCCGAGGGTGCAGGCGTGGGCCAGGCCGCCGAGGCCGGCTGA

Related Sequences

XP_004846623.1 Protein

Prph2 PREDICTED: peripherin-2 isoform X2 [Heterocephalus glaber]

Length: 346 aa      View alignments
>XP_004846623.1
MALLKVKFDQKKRVKLAQGLWLMNWLSVLAGIILFSMGLFLKIELRKRSEVMNNAESHFVPNCLIGVGVVSCIFNSLAGKICYDTLDPAKFAKWRPWLKPYLAICVLFNIILFFVALCCFLLQGSLESSLAHGLRSGMKYYRDTDTPGRCFMKKTMDMLQIEFQCCGNSGFRDWFEIQWISNRYLDFSSKEVKDRIKSNVDGRYLVDGVPFSCCNPSSPRPCIQYQLTNNSAHYSYDHQTEELNLWLGGCRDALLGYFSSLMSSMGVASMIVWLFEVTITIGLRYLHTALEGLSNPEDPHFESEGWLLEKSVPETWKAFLESLKKLGKGNQVEAEGAGVGQAAEAG