Details from NCBI annotation

Gene Symbol Loh12cr1
Gene Name loss of heterozygosity, 12, chromosomal region 1, transcript variant X1
Entrez Gene ID 101701817

Database interlinks

Part of NW_004624752.1 (Scaffold)

For more information consult the page for NW_004624752.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

LOH12CR1 ENSCPOG00000014767 (Guinea pig)

Gene Details

loss of heterozygosity, 12, chromosomal region 1

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000013305, Guinea pig)

Protein Percentage 98.47%
CDS Percentage 94.39%
Ka/Ks Ratio 0.02757 (Ka = 0.0069, Ks = 0.251)

LOH12CR1 ENSG00000165714 (Human)

Gene Details

loss of heterozygosity, 12, chromosomal region 1

External Links

Gene Match (Ensembl Protein ID: ENSP00000321546, Human)

Protein Percentage 96.94%
CDS Percentage 92.86%
Ka/Ks Ratio 0.03263 (Ka = 0.0129, Ks = 0.3949)

Loh12cr1 ENSMUSG00000042992 (Mouse)

Gene Details

loss of heterozygosity, 12, chromosomal region 1 homolog (human)

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000127413, Mouse)

Protein Percentage 87.69%
CDS Percentage 81.88%
Ka/Ks Ratio 0.07942 (Ka = 0.0821, Ks = 1.0338)

LOH12CR1 ENSRNOG00000006505 (Rat)

Gene Details

loss of heterozygosity, 12, chromosomal region 1

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000008645, Rat)

Protein Percentage 93.85%
CDS Percentage 87.52%
Ka/Ks Ratio 0.03937 (Ka = 0.0298, Ks = 0.7558)

Genome Location

Sequence Coding sequence

Length: 591 bp    Location: 25504575..25418206   Strand: -
>XM_004845868.1
ATGGGTAGTGAGCAGAGCTCCGAGGCCGAGAGCCGACCCAACGATCTGAACTCCTCAGTGACTCCTTCTCCAGCCAAGCATAGAGCCAAGATGGATGATATTGTGGTTGTAGCTCAGGGCTCTCAAGCCTCACGGAACGTCAGCAATGATCCAGACGTCATCAAGTTGCAAGAGATTCCAACCTTCCAGCCCCTTTTGAAAGGGCTGTTGAGTGGCCAGACATCCCCCACAAATACCAAATTGGAGAAACTGGATTCTCAGCAGGTGTTGCAGCTCTGCCTCCGGTACCAGGATCACCTGCACCAGTGTGCGGAGGCAGTAGCTTTTGATCAGAATGCTTTGATTAAACGAATAAAGGAGATGGACCTGTCTGTAGAAACCCTCTTTAGCTTCATGCAGGAGCGCCAGAAAAGATATGCCAAATACGCCGAGCAGATCCAGAAAGTCAACGAGATGTCCGCCATCCTGCGCCGCATCCAGATGGGCATCGACCAGACGGTGCCCCTCATGGAGCGGCTCAACAGCCTGCTGCCCGAGGGCGAGCGCCTGGAGCCCTTCAGCATGAAGCCCGAGCGGGAGCTCAGGCTGTAA

Related Sequences

XP_004845925.1 Protein

Loh12cr1 PREDICTED: loss of heterozygosity 12 chromosomal region 1 protein isoform X1 [Heterocephalus glaber]

Length: 196 aa      View alignments
>XP_004845925.1
MGSEQSSEAESRPNDLNSSVTPSPAKHRAKMDDIVVVAQGSQASRNVSNDPDVIKLQEIPTFQPLLKGLLSGQTSPTNTKLEKLDSQQVLQLCLRYQDHLHQCAEAVAFDQNALIKRIKEMDLSVETLFSFMQERQKRYAKYAEQIQKVNEMSAILRRIQMGIDQTVPLMERLNSLLPEGERLEPFSMKPERELRL