Sequence details NCBI ID: XM_004845806.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Lmo3
Gene Name LIM domain only 3 (rhombotin-like 2), transcript variant X1
Entrez Gene ID 101711514

Database interlinks

Part of NW_004624752.1 (Scaffold)

For more information consult the page for NW_004624752.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

LMO3 ENSCPOG00000000364 (Guinea pig)

Gene Details

LIM domain only 3 (rhombotin-like 2)

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000000319, Guinea pig)

Protein Percentage 94.87%
CDS Percentage 92.09%
Ka/Ks Ratio 0.20062 (Ka = 0.0483, Ks = 0.2408)

LMO3 ENSG00000048540 (Human)

Gene Details

LIM domain only 3 (rhombotin-like 2)

External Links

Gene Match (Ensembl Protein ID: ENSP00000442786, Human)

Protein Percentage 88.97%
CDS Percentage 87.13%
Ka/Ks Ratio 0.17628 (Ka = 0.0831, Ks = 0.4714)

Lmo3 ENSMUSG00000030226 (Mouse)

Gene Details

LIM domain only 3

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000125335, Mouse)

Protein Percentage 100.0%
CDS Percentage 92.41%
Ka/Ks Ratio 0.001 (Ka = 0.0004, Ks = 0.3825)

Lmo3 ENSRNOG00000047450 (Rat)

Gene Details

LIM domain only 3

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000064297, Rat)

Protein Percentage 100.0%
CDS Percentage 91.95%
Ka/Ks Ratio 0.001 (Ka = 0.0005, Ks = 0.471)

Genome Location

Sequence Coding sequence

Length: 471 bp    Location: 21487125..21542602   Strand: +
Raw sequence   
>XM_004845806.1
ATGCAGAAAAGGGAGAAAAGTTTTGGTATACAAATGCTCTCAGTCCAGCCAGACACCAAGCCGAAAGGTTGTGCTGGCTGCAACCGAAAGATTAAGGACCGGTATCTTCTAAAGGCACTGGACAAATATTGGCATGAAGACTGCCTGAAGTGTGCCTGCTGTGACTGTCGTTTGGGAGAGGTGGGCTCCACCCTGTACACGAAAGCTAATCTTATCCTTTGTCGCAGAGACTATCTGAGGCTCTTCGGTGTAACAGGAAACTGCGCGGCCTGTAGTAAGCTCATCCCTGCCTTTGAGATGGTGATGAGAGCCAAGGACAACGTCTACCACCTGGACTGCTTCGCCTGTCAGCTTTGTAATCAGAGATTTTGTGTTGGAGACAAATTTTTCTTAAAGAATAACATGATCCTTTGCCAGACAGACTACGAGGAAGGCTTAATGAAAGAAGGTTACGCACCCCAGGTTCGCTGA

Related Sequences

XP_004845863.1 Protein

Lmo3 PREDICTED: LIM domain only protein 3 isoform X1 [Heterocephalus glaber]

Length: 156 aa      View alignments
>XP_004845863.1
MQKREKSFGIQMLSVQPDTKPKGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRLFGVTGNCAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQRFCVGDKFFLKNNMILCQTDYEEGLMKEGYAPQVR