Details from NCBI annotation

Gene Symbol Slco1c1
Gene Name solute carrier organic anion transporter family, member 1C1, transcript variant X1
Entrez Gene ID 101703944

Database interlinks

Part of NW_004624752.1 (Scaffold)

For more information consult the page for NW_004624752.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

SLCO1C1 ENSCPOG00000005000 (Guinea pig)

Gene Details

solute carrier organic anion transporter family, member 1C1

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000004501, Guinea pig)

Protein Percentage 92.82%
CDS Percentage 92.58%
Ka/Ks Ratio 0.16465 (Ka = 0.0356, Ks = 0.216)

SLCO1C1 ENSG00000139155 (Human)

Gene Details

solute carrier organic anion transporter family, member 1C1

External Links

Gene Match (Ensembl Protein ID: ENSP00000370964, Human)

Protein Percentage 82.56%
CDS Percentage 83.78%
Ka/Ks Ratio 0.2584 (Ka = 0.1154, Ks = 0.4464)

Slco1c1 ENSMUSG00000030235 (Mouse)

Gene Details

solute carrier organic anion transporter family, member 1c1

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000032362, Mouse)

Protein Percentage 80.87%
CDS Percentage 82.61%
Ka/Ks Ratio 0.22297 (Ka = 0.1155, Ks = 0.518)

Slco1c1 ENSRNOG00000009740 (Rat)

Gene Details

solute carrier organic anion transporter family, member 1c1 (Slco1c1), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000013230, Rat)

Protein Percentage 83.26%
CDS Percentage 82.84%
Ka/Ks Ratio 0.18132 (Ka = 0.1007, Ks = 0.5554)

Genome Location

Sequence Coding sequence

Length: 2136 bp    Location: 17765561..17720716   Strand: -
>XM_004845787.1
ATGGATACTTCATCCAAAGAAAATATCCAGTTTTTCTGCAAAAATTCAGTGCAACCTGTTGGAAGGCCTTCCTTCAAAACAAAATATCCCTCTTCAGAGGAAAAACAGTCATGTTGTGGTGAACTAAAGGTGTTCTTGGGTGGCTTGTCCTTTGTTTTCTTTGCCAAAGCATTGGCTGAAGGCTATCTGAAGAGCACCATCACTCAGATAGAGAGAAGGTTTGATATTCCCTCCTCACTGGTAGGAGTCATTGATGGGAGTTTTGAAATTGGAAATCTCTTGGTTATAACATTTGTTAGCTACTTTGGAGCCAAACTTCACAGGCCAAAAATAATTGGAGCAGGGTGCCTGATCATGGGCGTAGGGACGCTGCTCATCGCCATGCCTCAGTTCTTCATGGAGCGGTACAGGTATGAGAAATATTCGCCTTTCTCCAATTCTACTCTTAGCATCTCTCCATGTCTCCTAGAGTCAAGCAGTCAATTACCAATTTCAGTTATGGCAAAATCACAACCCCAAACAAGTGATGAATGTGACGTGGATGCCAGCTCTTCCATGTGGGTGTATGTGTTCCTAGGAAATCTTCTCCGTGGGTTAGGAGAAACTCCTATCCAGCCACTGGGCATTGCCTATCTGGATGACTTTGCTGGTGAAGAGAATGCTGCTTTCTATATTGGGTGTGTGCAGACGGTTGCAATTATTGGACCAATCTTTGGCTTCCTGTTAGGCTCATTATGCGCCAAATTGTATGTGGATATTGGCTTTGTAAACCTAGACCATGTTACCATTACCCCGAAGGACCCTCAGTGGGTAGGGGCCTGGTGGCTTGGTTACCTGATAGCAGGAGTCATAAGTCTTCTTGCAGCTGTGCCTTTCTGGTGTTTACCCAAGAGCCTATCAAGACCCCAAAGTAGAGAAGACTCTAATTCTTCAGAGAAATCCAAGTTTATTATAGATGATCATATAAAATACCAAACACATGCTGAAGAAAAAGGAAAAATAATGGAAATGGCAAGAGATTTTCTTCCATCACTGAGGAGTCTTTTTGGAAACCCCGTGTACCTCTTATATTTGTGTGCAAGCATCGTTCAGTTCAATTCTCTATTTGGCATGGTGACGTATAAACCGAAGTACATCGAGCAGCAGTATGGGCAGTCATCCTCGAAGGCCAACTTTGTCATCGGACTCATCAACATACCAGCAGTGGCCCTTGGAGTATTCTCTGGGGGAATAGTCATGAAAAAATTCAGACTCAGCATGTGTGGAGCTGCAAAACTCTACTTGGGATCATCTGTTTTTGGTTACCTCCTCTTCCTTTCCTTATTTGCCTTGGGATGTGAAAATTCTGATGTGGCAGGACTTACTGTCTCCTACCAAGGAACCAAACCTGTCTCTTATCATGAACGAGCTCTCTTTTCAGATTGCAACTCAAGATGTAAATGTTCAGAGACGAAGTGGGAGCCGATGTGTGGAGAAAATGGAATTACATATGCATCAGCTTGTTTTGCTGGTTGTCACACCTCCAACATGACTGGAAAGAACATTACATTTTATAATTGCACCTGTGTGGGGATTATAGCTTCTAAATCAGGAAATTTCTCAGGCACGGTGGGCAGATGCCAAAAAGATAATGGATGTTCCAAAATGTTTCTGTATTTCCTTGTAATTTCAGTCATCACGTCCTATACTTTGTCCCTAGGTGGCATACCTGGATACATATTACTTCTGAGGTGCGTTAAACCACAACTTAAGTCTTTTGCCCTGGGTATCTACACTTTAGCAATAAGAGTTCTTGCAGGAATCCCAGCTCCAGTATATTTTGGAGTTTTGATTGACACTTCTTGTCTTAAATGGGGATTTAAAAGGTGTGGAACCAGAGGCTCATGCAGATTATATGATTCACATGCTTTCAGATACATATATCTGGGACTGACTATGATTTTGGGCACAATGTCCATTTTCCTAAGCACTGCGGTACTTTTGACTTTAAAGAAAAGTTATGTTTCAGAACCTAGAACCTTCATAACCAAAAGAGACAGAACAATGGTTTCTACAAGATTCAAGAAAGAGAACTGTCCTACAAGTGATCATTTGCTACATCCCATCTACTGGCCAGGCAAGGAAACGCGACTTTAG

Related Sequences

XP_004845844.1 Protein

Slco1c1 PREDICTED: solute carrier organic anion transporter family member 1C1 isoform X1 [Heterocephalus glaber]

Length: 711 aa      View alignments
>XP_004845844.1
MDTSSKENIQFFCKNSVQPVGRPSFKTKYPSSEEKQSCCGELKVFLGGLSFVFFAKALAEGYLKSTITQIERRFDIPSSLVGVIDGSFEIGNLLVITFVSYFGAKLHRPKIIGAGCLIMGVGTLLIAMPQFFMERYRYEKYSPFSNSTLSISPCLLESSSQLPISVMAKSQPQTSDECDVDASSSMWVYVFLGNLLRGLGETPIQPLGIAYLDDFAGEENAAFYIGCVQTVAIIGPIFGFLLGSLCAKLYVDIGFVNLDHVTITPKDPQWVGAWWLGYLIAGVISLLAAVPFWCLPKSLSRPQSREDSNSSEKSKFIIDDHIKYQTHAEEKGKIMEMARDFLPSLRSLFGNPVYLLYLCASIVQFNSLFGMVTYKPKYIEQQYGQSSSKANFVIGLINIPAVALGVFSGGIVMKKFRLSMCGAAKLYLGSSVFGYLLFLSLFALGCENSDVAGLTVSYQGTKPVSYHERALFSDCNSRCKCSETKWEPMCGENGITYASACFAGCHTSNMTGKNITFYNCTCVGIIASKSGNFSGTVGRCQKDNGCSKMFLYFLVISVITSYTLSLGGIPGYILLLRCVKPQLKSFALGIYTLAIRVLAGIPAPVYFGVLIDTSCLKWGFKRCGTRGSCRLYDSHAFRYIYLGLTMILGTMSIFLSTAVLLTLKKSYVSEPRTFITKRDRTMVSTRFKKENCPTSDHLLHPIYWPGKETRL