Sequence details NCBI ID: XM_004845583.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Pdgfb
Gene Name platelet-derived growth factor beta polypeptide, transcript variant X1
Entrez Gene ID 101698830

This gene is present in the GenAge database and has been identified as potentially important to ageing in humans.

Database interlinks

Part of NW_004624752.1 (Scaffold)

For more information consult the page for NW_004624752.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

PDGFB ENSCPOG00000005394 (Guinea pig)

Gene Details

platelet-derived growth factor beta polypeptide

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000004854, Guinea pig)

Protein Percentage 95.44%
CDS Percentage 93.78%
Ka/Ks Ratio 0.07435 (Ka = 0.0213, Ks = 0.2863)

PDGFB ENSG00000100311 (Human)

Gene Details

platelet-derived growth factor beta polypeptide

External Links

Gene Match (Ensembl Protein ID: ENSP00000330382, Human)

Protein Percentage 87.55%
CDS Percentage 87.28%
Ka/Ks Ratio 0.11505 (Ka = 0.0655, Ks = 0.5691)

Pdgfb ENSMUSG00000000489 (Mouse)

Gene Details

platelet derived growth factor, B polypeptide

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000000500, Mouse)

Protein Percentage 87.55%
CDS Percentage 85.34%
Ka/Ks Ratio 0.08885 (Ka = 0.0646, Ks = 0.7268)

Pdgfb ENSRNOG00000017197 (Rat)

Gene Details

platelet-derived growth factor beta polypeptide (Pdgfb), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000023196, Rat)

Protein Percentage 87.55%
CDS Percentage 84.92%
Ka/Ks Ratio 0.08569 (Ka = 0.0657, Ks = 0.7661)

Genome Location

Sequence Coding sequence

Length: 726 bp    Location: 9072017..9088207   Strand: +
Raw sequence   
>XM_004845583.1
ATGAATCGCTGTTGGGCGCTCTTCCTGTCTCTCTGCTGTTACCTGCGCCTGGTCAGCGCCGAGGGGGACCCCATTCCCGAGGAACTCTATGAGATGCTGAGTGACCAGTCCATCCGCTCCTTCGATGACCTCCAGCGCCTGCTGCATGGAGACTCCGTAGATGAGGATGGGGCCGAGGTGGACCTGAATGTGACCCGGGCCCACTCAGGACGTGAGGCTGAAGGCTCATCTCGCGGGAGGAGGAGCCTGGGTTCCCCGACAGTGGCCGAGCCAGCTGTGATTGCCGAGTGCAAGACGCGCACTGAGGTGTTCCAGATCTCCCGGAACCTCATCGACCGCTCCAACGCCAACTTCCTGGTGTGGCCGCCCTGCGTGGAGGTGCAGCGATGCTCCGGCTGCTGCAACAACCGCAACGTGCAATGCCGGCCCACGCAGGTGCAGCTGCGGCCGGTGCAGGTGAGGAAGATCGAGATTGTGCGGGGGAAGCCGACCTTTAAGAAGGCCACGGTGACACTGGAAGACCACCTGGCCTGCAAGTGTGAGACAGTGGTGTCTGCCCGGCCTGTGACCCGAAGCCAGGGGAGCTCCCAGGAGCAGCGAGCCAGGACTCCCCAGACTCGGACGGCCGTCCGGACAGTGCGAGTCCGCAGGCCCCCCAAGGGGAAGCACCGCAAGTTCAAGCACACGCATGACAAGGAGACGCTGAAAGAGACCCTCGGAGCATAG

Related Sequences

XP_004845640.1 Protein

Pdgfb PREDICTED: platelet-derived growth factor subunit B isoform X1 [Heterocephalus glaber]

Length: 241 aa      View alignments
>XP_004845640.1
MNRCWALFLSLCCYLRLVSAEGDPIPEELYEMLSDQSIRSFDDLQRLLHGDSVDEDGAEVDLNVTRAHSGREAEGSSRGRRSLGSPTVAEPAVIAECKTRTEVFQISRNLIDRSNANFLVWPPCVEVQRCSGCCNNRNVQCRPTQVQLRPVQVRKIEIVRGKPTFKKATVTLEDHLACKCETVVSARPVTRSQGSSQEQRARTPQTRTAVRTVRVRRPPKGKHRKFKHTHDKETLKETLGA