Sequence details NCBI ID: XM_004845469.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Tcf20
Gene Name transcription factor 20 (AR1), transcript variant X3
Entrez Gene ID 101721584

Database interlinks

Part of NW_004624752.1 (Scaffold)

For more information consult the page for NW_004624752.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

TCF20 ENSCPOG00000024611 (Guinea pig)

Gene Details

transcription factor 20 (AR1)

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000014749, Guinea pig)

Protein Percentage 94.11%
CDS Percentage 93.22%
Ka/Ks Ratio 0.16122 (Ka = 0.0306, Ks = 0.1901)

TCF20 ENSG00000100207 (Human)

Gene Details

transcription factor 20 (AR1)

External Links

Gene Match (Ensembl Protein ID: ENSP00000352463, Human)

Protein Percentage 93.33%
CDS Percentage 91.19%
Ka/Ks Ratio 0.12006 (Ka = 0.0339, Ks = 0.2826)

Tcf20 ENSRNOG00000009585 (Rat)

Gene Details

transcription factor 20 (Tcf20), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000012699, Rat)

Protein Percentage 91.88%
CDS Percentage 89.17%
Ka/Ks Ratio 0.12052 (Ka = 0.0433, Ks = 0.359)

Genome Location

Sequence Coding sequence

Length: 5889 bp    Location: 6446452..6537169   Strand: +
Raw sequence   
>XM_004845469.1
ATGCAGTCCTTTCGAGAGCAAAGCAGTTACCACGGAAACCAGCAGAGCTACCAACAGGAAGTACACAGCTCATCCCGGATAGAAGAGTTCAGCCCTCGTCAGGCCCAGATGTTCCAGAATTTTGGGGGTGCAAGTGGCAGTAGTGGTGGCAGTGGTGGCGGCAGTGGTGGTGGACGACGAGGAACAGCGGCTGCTGCTGCTGCAGTGATGGCTAGCGAGGCCTCTGGTCACCAGGGGTACCAGGGGTTCAGGAAAGAGGCTGGAGATTTTTACTACATGGCAGGCAACAAAGACCCCGTGGCAACAGGAACCCCACAGCCTCCTCAGCGAAGGCCTTCTGGGCCCGTGCAGAGCTATGGACCACCCCAGGGGAGCAGCTTTGGCAATCAGTATGGGAGCGAGGGTCATGTAGGCCAGTTTCAAGCACAGCACTCTGCCCTTGGTGGTGTGTCTCATTATCAGCAGGATTACACAGGGCCTTTCTCTCCTGGGAGTGCTCAGTACCAACAGCAGGCTTCTAGCCAACAGCAGCAGCAAGTACAGCAATTGAGACAACAGCTTTACCAGTCCCATCAACCTCTGCCACAAGCCGCTGGCCAGCCCACCTCCGGCTCATCCCATCTACAGCCAATGCAGCGGCCCTCAACTCTGCCATCCACTGCTGCTGGCTACCAGTTAAGAGTGGGTCAGTTTGGCCAGCACTACCAGTCTTCTGCTTCTTCCTCCTCTTCCTCCTCCTTCCCTTCACCACAGCGTTTCAGCCAGTCTGGACAGAGCTATGATGGCAGTTACAGTGTGAATGCTGGCTCCCAGTACGAAGGGCATAATGTAGGTTCTAATGCACAGGCTTATGGAACCCAATCAAATTACAGCTATCAGCCTCAATCTATGAAAAATTTTGAACAGACAAAGATTCCACAAGGGACCCAGCAGGGGCAGCAGCAGCAGCAAACACAGCCGCAAACACAGCCGCAGCAGCAGCAACAGCAGCAGCAGCAGCAGCAACAGCAACAGCAACAGCAGCAACAGCAGCAGCAACAGCAACAACATCCCCCTCAGCATGTGATGCAGTACACCAATGCTGCCACCAAGCTGCCCCTTCAAAGCCAGGTGGGGCAGTACAGCCAGCCCGAGGTTCCTGTGAGGTCCCCCATGCAGTTTCACCAGAACTTCAGCCCCATCTCTAATCCCTCTCCAGCTGCCTCTGTGGTTCAGTCTCCAAGCTGCAGCTCCACCCCCTCTCCTCTCATGCAGAGTGGGGAGAATCTTCAGTGTGGGCAAGGCAGTGTGCCCATGGGTTCCAGAAACCGAATTTTACAGTTAATGCCTCAGCTCAGTCCAACTCCATCGATGATGCCCAGTCCTAATTCTCATGCTTCAGGCTTCAAAGGGTTTGGGCTAGAAGTGGTGCCAGAAAAGCGGCTGACGGATCCTGGGTTGAGTAGTTTGAGTGCCCTGAGTACGCAAGTGGCCAATCTTCCTAATACTGTCCAACACATGTTACTTTCTGATGCCCTGACACCTCAGAAAAAGACCTCCAAGAGGCCCTCCTCATCATCTAAGAAGGCAGACAGCTGCACAAACTCAGAAGGCTCCTCACAGCCTGAGGAGCAGCTGAAGTCCCCAATGGCAGAGTCCTTGGACGGAGGCTGCTCCAGCAGCTCAGAGGACCAAGGCGAGAGAGTGAGGCAGCTAAGTGGCCAGAGTACCAGCTCTGACACCACCTATAAGGGTGGAACCTCAGAGAAAGCTGGCACCTCACCAGCACAAGGCACTCAGAGTGAGCCCCCGAGACTGAGTGCCAGTCCTGCACCTAGAGAAGAGGCCACTTCACCGGGTGCTAAGGATGCCCCACTGTCATCTGAGGGGAACCCAAAAGTCAACGAGAAGACAGTTGGGGTGATTGTGTCCCGGGAAGCCATGGCAGGTCGGGTAGAAAAGCCTGGTGGACAGGATAAAGGCTCCCCAGAGGATGAGTCTGCGGCCACTCCACAGCCACCCAGCAACAGTGGGGCAAAGGAATCCAGTCAAACATCACTTCCACAGCCAGAGCCTCCAGGAGGAGGGAGCAAAGGAAACAAGAATGGTGATGGCAGCTCCAATCATAACGGAGAAGGAAATGGACAGACTGGCCACTCCACAGTGGGCCCTGGTTTCACAGGCAGGACTGAGCCCAGCAAGTCTCCTGGAAGCCTGCGTTATAGTTACAAAGAGAGTTTTGGGTCAGCTGTGCCACAAAATGTCAGTAGCTTTCCTCAGTATCCTACAGGGCAAGAAAAGGGGGACTTCACTGGCCATGGGGAACGAAAGGGTAGAAATGAGAAGTTTCCCAGCCTTCTGCAGGAAGTGCTTCAGGGTTACCACCACCACCCTGACAGGAGGTATTCCAGGAGTGCTCAGGAGCATCAGGGGATGGCTGGTGGCCTGGAAGGAACCTCGAGGCCCAATGTCCTAGTTAGTCAAACCAATGAATTAGCTAGCAGGGGCCTTCTGAACAAAAGCATTGGAGCCCTGTTAGAAAACCCCCACTGGGGACCCTGGGAAAGAAAGTCAAGCAGCGCAGCTCCTGAAATGAAACAGATCAATTTGGCCGACTATCCAATTCCCAGAAAGTTTGAAATAGAGCCTCCATCATCAGCTCATGAGCCTGGAGGCTCTCTCTCTGAAAGGAGATCAGTGATCTGTGACATTTCTCCCCTAAGACAGATTGTCAGGGAACCAGGGGCTCACTCACTGGGGCACATGGGTGCCGACACCAGAATTGGGAGGAACGAACGTCTCAACCAAAGTTTAAGTCAGTCCATCATTCTTCCAGGTGGATTGGTGTCCATGGAAACAAAGCTGAAATCCCAGAGCGGGCAGATAAAAGAGGAAGACTTTGAACAACCCAAATCCCAAACTAGTTTTAACAACAAGAAATCTGGAGACCACTGTCATCCCACTAGCATCAAGCATGAATCTTACCGTGGCAATGCCAGCCCAGGAGCAGCAGCCCACGATTCCCTTTCAGAATATGGCCCCCAAGACAGCAGACCCACGCCAATGAGGCGGGTCCCTGCCAGAGTTGGTAGTCAGGAGGCTATGAGGGGTCGGTCCCCTTCTCAGTACCATGACTTTGCAGAAAAATTGAAGATGTCTCCTGGGAGGAGCAGAGGCCCGGGAGGAGACCCTCATCACATGAACCCACACATGACTTTTTCAGAGAGGGCCAACAGAAGCTCTTTACACGCTCCTTTCTCTCCCAACTCAGAAAGCCTGGCCTCTGCATACCACACAAACACTCGGGCTCATGCTTATGGGGATCCTAACACAGGTTTGAATTCCCAGCTCCATTATAAGAGACAGATGTACCAACAGCAGCAAGAGGAGTATAAAGATTGGAGCAGCAGTTCTGCTCAGGGAGTAATTGCTGCCGCACAGCACAGGCAGGAGGGATCTCGGAAGAGCCCACGACAGCAGCAGTTTCTTGACAGAGTACGGAGCCCTCTGAAAAACGACAAAGATGGTATGATGTATGGCCCACCAGTAGGCACGTACCATGACCCTGGCTCGCAGGAAGCTGGGCGCTGCCTCTTGTCTAGTGACGGTCTGCCTAACAAAGGCATGGAATTGAAGCATGGCTCCCAGAAGTTACAAGAATCTTGTTGGGATCTCTCTCGGCAAACTTCTCCAGCCAAAAGCAGTGGTCCTCCAGGAATGTCCAGTCAGAAAAGGTACGGACCACCCCATGAGACTGATGGGCATGGACTAGCTGAGTCTACACAGTCATCGAAACCTAGTAATGTAATGCTGAGGCTTCCGGGCCAAGAGGACCATTCTTCTCAGAACCCCTTAATCATGCGGAGGCGTGTCCGTTCTTTTATCTCTCCCATTCCCAGTAAGAGACAGTCTCAAGATGTAAAGAACAGTAACACTGAAGATAAAGGGCGCCTCCTTCACCCATCAAAAGAAGGCACGGATAAAGCCTTCAATTCCTATGCCCATCTCTCTCACAGTCAGGATATCAAGTCTATCCCTAAGAGAGATTCCTCCAAGGACCTTCCAAGCTCAGATAATAGAAACTGCCCTGCTGTTACCCTCACAAGCCCTGCTAAGACCAAAATACTCCCCCCACGGAAAGGACGAGGATTGAAACTGGAAGCTATAGTTCAGAAGATCACATCCCCAAATATCAGGAGGAGTGCATCTACAAACAGCGCAGAGGCCGGGGGAGACACAGTGACGCTGGATGACATACTGTCTCTAAAGAGTGGTCCTCCTGAAGGCAGCACAGTGGCTGCCCAGGAGGCCGAGATGGAGAAGAGAAAAGGTGAGGTGGTGTCTGACCTAGTGGGTCCAGCCAGCCAGGAGTCTAACATTGAAAAGCCTCTCGGAAGGTCTGCAGAAGAATGGCATGCCAGTGGGGATGACAAAGGGAAGGCAGAGACACACCCAGACACTGTTCCTGCTGGAAAGGAACCCCCTGGTGCCATGACATCCACGACCTCACAGAAGCCTGGAAATAACCAAGGGAGACCAGATGGTTCCCTGGGTGGGGCAGCACCGTTAATCTTTCCTGACTCAAAGAATGTAGCTCCAGTGGGCATATTGGCCCCCGAGGCAAACCCCAAGGCTGAAGAGAAGGAGAATGAAACAGTGACCATTTCACCCAAACAAGAGAGTTTCCCCCCAAAGGGATATTTCCCATCAGGAAAGAAGAAGGGGAGACCCATTGGCAGTGTGAATAAGCAAAAAAAGCAGCAACAGCCACCACCCCCGCCTCCCCAGCCACCTCAGATACCAGAAGGTTCTGCAGATGGAGAGCCAAAGCCAAAAAAACAGAGGCAAAGGAGAGAGAGAAGGAAGCCTGGGGCCCAACCAAGGAAACGGAAAACCAAACAAGCAGTTCCCATCATAGAACCCCAGGAGCCTGAGATCAAGCTAAAGTATGCCACCCAGCCACTGGATAAAACTGATGCCAAGAACAAGTCTTTTTACCCCTATATCCATGTAGTAAATAAGTGTGAACTTGGAGCCGTTTGTACAATCATCAATGCTGAAGAAGAGGAACAGACCAAATTGGTGAGGGGTCGGAAAGGTCAGAGGTCCCTGACCCCTCCCCCCAGCAGCACCGAAAGCAAGGTGCTCCCAGCTTCCTCCTTCATGCTGCAGGGGCCTGTGGTGACAGAGTCGTCTGTTATGGGGCACCTGGTTTGCTGTCTGTGTGGCAAGTGGGCCAGTTACCGGAACATGGGTGACCTCTTTGGACCCTTTTATCCCCAAGATTATGCAGCCACTCTCCCGAAGAATCTGCCTCCTAAGAGGGCCACAGAAATGCAGAGCAAAGTCAAGGTACGGCACAAAAGCGCTTCAAATGGCTCCAAGACGGACACCGAGGAGGAAGAGGAGCAGCAGAAGGAGCAGAGGAGCCTGGCTGCACACCCCAGGTTCAAGCGGCGCCACCGCTCGGAAGACTGTGGTGGAGGCCCTCGGTCCTTGTCCAGGGGGCTCCCTTGTAAGAAAGCAGCCACTGAGGGCAGCAGTGAAAAGACTATTTTGGACACAAAGCCCTCCATGCCCACCACTTCAGAAGGTGGCCCCGAGCCGGAGTTACAAATCCCTGAACTACCTCTTGATAGCAACGAATTTTGGGTCCATGAGGGTTGTATTCTCTGGGCCAATGGAATCTACCTGGTCTGCGGCAGGCTCTATGGCCTGCAGGAAGCGCTGGAAATAGCCAGAGAGATGAAATGCTCCCACTGCCAGGAGGCAGGCGCTACCCTGGGCTGCTACAACAAAGGCTGCTCCTTCCGATACCATTACCCATGTGCCATTGATGCAGATTGTTTGCTACATGAGGAGAACTTCTCGGTGAGGTGCCCTAAGCACAAGGTTAGACTGTGGAGATGA

Related Sequences

XP_004845526.1 Protein

Tcf20 PREDICTED: transcription factor 20 isoform X3 [Heterocephalus glaber]

Length: 1962 aa      View alignments
>XP_004845526.1
MQSFREQSSYHGNQQSYQQEVHSSSRIEEFSPRQAQMFQNFGGASGSSGGSGGGSGGGRRGTAAAAAAVMASEASGHQGYQGFRKEAGDFYYMAGNKDPVATGTPQPPQRRPSGPVQSYGPPQGSSFGNQYGSEGHVGQFQAQHSALGGVSHYQQDYTGPFSPGSAQYQQQASSQQQQQVQQLRQQLYQSHQPLPQAAGQPTSGSSHLQPMQRPSTLPSTAAGYQLRVGQFGQHYQSSASSSSSSSFPSPQRFSQSGQSYDGSYSVNAGSQYEGHNVGSNAQAYGTQSNYSYQPQSMKNFEQTKIPQGTQQGQQQQQTQPQTQPQQQQQQQQQQQQQQQQQQQQQQQQQHPPQHVMQYTNAATKLPLQSQVGQYSQPEVPVRSPMQFHQNFSPISNPSPAASVVQSPSCSSTPSPLMQSGENLQCGQGSVPMGSRNRILQLMPQLSPTPSMMPSPNSHASGFKGFGLEVVPEKRLTDPGLSSLSALSTQVANLPNTVQHMLLSDALTPQKKTSKRPSSSSKKADSCTNSEGSSQPEEQLKSPMAESLDGGCSSSSEDQGERVRQLSGQSTSSDTTYKGGTSEKAGTSPAQGTQSEPPRLSASPAPREEATSPGAKDAPLSSEGNPKVNEKTVGVIVSREAMAGRVEKPGGQDKGSPEDESAATPQPPSNSGAKESSQTSLPQPEPPGGGSKGNKNGDGSSNHNGEGNGQTGHSTVGPGFTGRTEPSKSPGSLRYSYKESFGSAVPQNVSSFPQYPTGQEKGDFTGHGERKGRNEKFPSLLQEVLQGYHHHPDRRYSRSAQEHQGMAGGLEGTSRPNVLVSQTNELASRGLLNKSIGALLENPHWGPWERKSSSAAPEMKQINLADYPIPRKFEIEPPSSAHEPGGSLSERRSVICDISPLRQIVREPGAHSLGHMGADTRIGRNERLNQSLSQSIILPGGLVSMETKLKSQSGQIKEEDFEQPKSQTSFNNKKSGDHCHPTSIKHESYRGNASPGAAAHDSLSEYGPQDSRPTPMRRVPARVGSQEAMRGRSPSQYHDFAEKLKMSPGRSRGPGGDPHHMNPHMTFSERANRSSLHAPFSPNSESLASAYHTNTRAHAYGDPNTGLNSQLHYKRQMYQQQQEEYKDWSSSSAQGVIAAAQHRQEGSRKSPRQQQFLDRVRSPLKNDKDGMMYGPPVGTYHDPGSQEAGRCLLSSDGLPNKGMELKHGSQKLQESCWDLSRQTSPAKSSGPPGMSSQKRYGPPHETDGHGLAESTQSSKPSNVMLRLPGQEDHSSQNPLIMRRRVRSFISPIPSKRQSQDVKNSNTEDKGRLLHPSKEGTDKAFNSYAHLSHSQDIKSIPKRDSSKDLPSSDNRNCPAVTLTSPAKTKILPPRKGRGLKLEAIVQKITSPNIRRSASTNSAEAGGDTVTLDDILSLKSGPPEGSTVAAQEAEMEKRKGEVVSDLVGPASQESNIEKPLGRSAEEWHASGDDKGKAETHPDTVPAGKEPPGAMTSTTSQKPGNNQGRPDGSLGGAAPLIFPDSKNVAPVGILAPEANPKAEEKENETVTISPKQESFPPKGYFPSGKKKGRPIGSVNKQKKQQQPPPPPPQPPQIPEGSADGEPKPKKQRQRRERRKPGAQPRKRKTKQAVPIIEPQEPEIKLKYATQPLDKTDAKNKSFYPYIHVVNKCELGAVCTIINAEEEEQTKLVRGRKGQRSLTPPPSSTESKVLPASSFMLQGPVVTESSVMGHLVCCLCGKWASYRNMGDLFGPFYPQDYAATLPKNLPPKRATEMQSKVKVRHKSASNGSKTDTEEEEEQQKEQRSLAAHPRFKRRHRSEDCGGGPRSLSRGLPCKKAATEGSSEKTILDTKPSMPTTSEGGPEPELQIPELPLDSNEFWVHEGCILWANGIYLVCGRLYGLQEALEIAREMKCSHCQEAGATLGCYNKGCSFRYHYPCAIDADCLLHEENFSVRCPKHKVRLWR