Sequence details NCBI ID: XM_004845442.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Tspo
Gene Name translocator protein (18kDa), transcript variant X4
Entrez Gene ID 101713080

Database interlinks

Part of NW_004624752.1 (Scaffold)

For more information consult the page for NW_004624752.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

TSPO ENSCPOG00000021141 (Guinea pig)

Gene Details

translocator protein (18kDa)

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000018576, Guinea pig)

Protein Percentage 85.21%
CDS Percentage 87.57%
Ka/Ks Ratio 0.19061 (Ka = 0.0806, Ks = 0.4227)

TSPO ENSG00000100300 (Human)

Gene Details

translocator protein (18kDa)

External Links

Gene Match (Ensembl Protein ID: ENSP00000328973, Human)

Protein Percentage 83.43%
CDS Percentage 84.62%
Ka/Ks Ratio 0.09894 (Ka = 0.0867, Ks = 0.8758)

Tspo ENSMUSG00000041736 (Mouse)

Gene Details

translocator protein

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000037039, Mouse)

Protein Percentage 84.02%
CDS Percentage 80.87%
Ka/Ks Ratio 0.08789 (Ka = 0.0963, Ks = 1.0957)

Tspo ENSRNOG00000010549 (Rat)

Gene Details

translocator protein (Tspo), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000014089, Rat)

Protein Percentage 83.43%
CDS Percentage 81.66%
Ka/Ks Ratio 0.10059 (Ka = 0.0916, Ks = 0.9104)

Genome Location

Sequence Coding sequence

Length: 510 bp    Location: 5820151..5814766   Strand: -
Raw sequence   
>XM_004845442.1
ATGGCTCCACCCTTGGTGCCTGCTGTGGGCCTCACGCTTGTGCCCAACCTGGGGGGCTTCGTGGGCTCCTACTTCGTCCGTGGTGAGGGGCTCCGCTGGTATGACACCCTGCAGAAGCCCTCGTGGCACCCGCCGCGCTGGGCGCTGGCTCCTGTCTGGGGCACGCTCTACTCGGCCATGGGGTATGGATCCTACATGGTCTGGAAGGAGCTGGGGGGCTTCACTGAGGAGGCCATGGTTCCCCTGGGCCTCTACGCGGGTCAGCTGGCCCTGAACTGGGCGTGGCCTCCCATCTTCTTTGGTGCCCGGCAGATGGGTTGGGCCCTGGTGGACCTCCTGCTCGTCAGCGGGGCAGCAACAGCTACGGCTGTGGCCTGGCACCATGTGAGCCCATCGGCCGCCCGCCTGCTCTACCCGTACCTGGCCTGGCTGGCCTTCGCGACCACACTTAACTACCGAATATGGCGGGATAACCACGGGCGCCGCGGTGGCCGGCAGATCCCAGAGTAA

Related Sequences

XP_004845499.1 Protein

Tspo PREDICTED: translocator protein isoform X4 [Heterocephalus glaber]

Length: 169 aa      View alignments
>XP_004845499.1
MAPPLVPAVGLTLVPNLGGFVGSYFVRGEGLRWYDTLQKPSWHPPRWALAPVWGTLYSAMGYGSYMVWKELGGFTEEAMVPLGLYAGQLALNWAWPPIFFGARQMGWALVDLLLVSGAATATAVAWHHVSPSAARLLYPYLAWLAFATTLNYRIWRDNHGRRGGRQIPE