Sequence details NCBI ID: XM_004845311.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Sbf1
Gene Name SET binding factor 1, transcript variant X2
Entrez Gene ID 101700750

Database interlinks

Part of NW_004624752.1 (Scaffold)

For more information consult the page for NW_004624752.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

SBF1 ENSCPOG00000014104 (Guinea pig)

Gene Details

SET binding factor 1

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000012704, Guinea pig)

Protein Percentage 94.85%
CDS Percentage 91.48%
Ka/Ks Ratio 0.07768 (Ka = 0.0278, Ks = 0.3573)

SBF1 ENSG00000100241 (Human)

Gene Details

SET binding factor 1

External Links

Gene Match (Ensembl Protein ID: ENSP00000370196, Human)

Protein Percentage 93.17%
CDS Percentage 88.79%
Ka/Ks Ratio 0.0539 (Ka = 0.0353, Ks = 0.6555)

Sbf1 ENSMUSG00000036529 (Mouse)

Gene Details

SET binding factor 1

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000118107, Mouse)

Protein Percentage 92.96%
CDS Percentage 87.07%
Ka/Ks Ratio 0.0609 (Ka = 0.0386, Ks = 0.6337)

Sbf1 ENSRNOG00000008392 (Rat)

Gene Details

SET binding factor 1 (Sbf1), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000066598, Rat)

Protein Percentage 93.12%
CDS Percentage 86.96%
Ka/Ks Ratio 0.05743 (Ka = 0.0375, Ks = 0.6535)

Genome Location

Sequence Coding sequence

Length: 5670 bp    Location: 297689..329974   Strand: +
Raw sequence   
>XM_004845311.1
ATGTCCTGGGAACAGCACCTCCCTGGGCAAAGGGCGCCAGGTCATGGGAGCGGGGAAGGCCAGGGCCAGATCCTGCAGCGCTTCCCAGAGAAGGACTGGGAAGACAACCCCTTCCCGCAGGGCATTGAGCTGTTTTGTCAGCCCAGTGGGTGGCAGGTGTGTCCTGAGAGGAACCCACCGACTTTCTTTGTTGCTGTCCTCACTGACATAAACTCTGAACGGCACTACTGCGCCTGCTTGACCTTCTGGGAGCCAGTGGAACCCAAACAGGAAGCAGTGGGCACCAAGGGCACCGTGGAAAGGGAGGAGGAGGCAGATGAGAGAGGCCAAGGCCAGCTGTCCCCTGCAACTCCGGTCCAGCCTGGCCAGCTGTATGCTCCGAAGACTCTGGTGCTGGTGTCGAGACTAGACCACACAGAAGTGTTCAGGAACAGCCTTGGGCTCATTTACACCATCCACGTGGAGGGCCTGAACGTGTGCCTGGAGAACGTGATTGGGAACCTGCTGACATGTACTGTCCCTTTGGCCGGGGGCTCACAGAGAACCATCTCTTTGGGAGCTGGTGACCGGCAGGTCATTCAGACCCCACTGGCCGACTCACTGCCTGTCAGCCGCTGTAGTGTGGCCTTGCTCTTCCGCCAGCTGGGCATCACCAACGTGCTCTCTCTGTTCTGTGCTGCCCTCACGGAACACAAGGTCCTCTTCCTGTCCCGGAGCTACCAGCGGCTTGCAGATGCCTGCAGGGGCCTCCTGGCTCTGCTCTTCCCTCTCAGATACAGCTTCACCTATGTACCCATCCTGCCGGCCCAGCTGCTGGAGGTCCTCAGCACACCCACGCCCTTCATCATCGGGGTCAATGCCGCCTTCCAGGCAGAGACTCAGGAACTGCTGGACGTGATTGTTGCTGACCTTGATGGAGGTACAGTGGCTGTCCCTGAGTGTGTGCACATTCCACCCCTGCCGGAGCCACTGCAGAGCCAGACCCACAGTGTTCTCAGCATGGTCCTGGATCCAGAGCTGGAGCTGGCTGATCTTGCCTTCCCCCCTCCCACAGTGTCCACTTCTTCCCTGAAGATGCAGGACAAGGAGCTGCGCGCTGTCTTCCTTCGGCTCTTTGCTCAGCTCCTGCAGGGCTACCGCTGGTGCCTGCACATCGTGCGCATCCACCCCGAGCCCGTCATCCGCTTCCACAAGGCAGCCTTCTTGGGCCAGCGTGGGCTAGTAGAAGATGACTTCCTGATGAAGGTGCTGGAGGGCATGGCCTTTGCAGGCTTTGTGTCAGAGCGTGGGGTTCCTTACCGACCCACGGACCTGTTTGATGAGCTGGTGGCCCACGAGGTGGCACGGATGCGTGCAGACGAGAATCACCCCCAGCGTGTCCTGCGTCACGTCCAGGAACTGGCAGAGCAGCTCTATAAGAATGAGAACCCATACCCGGCTGTGTCAATGCACAAGGTGCAGAGGCCGGGTGAGGCCGGTCATCCGTGGCGGGCACCCCGGCCCTTCCCCCGGCTGGATGAGGGCACTGTGCAGTGGATTGTGGACCAGGCAGCGGCCAAGATGCAGGGTGCACCCCCCGCCGTGAGGGCCGAGAGGAGGAGCACTGTGCCCTCGGGCTCCCCCATGACGGCCATAGCAGAGCGGAGCAGCGGGCCGCACATCAACAGCGCCCGGCGGCTGGAGGTGGTGCGGAGCTGCATCTCCTGTGTGTTCGAGGGCAAGATGCTCGAGGCCAAGAAGCTGCTCCCGGCTGTGCTCAGGGCCCTGAAGGGTCGTGCTGCCCGCCGCTGCCTTGCCCAGGAGCTGCATGTCCATGTGCAACAGAACCGGGCAGTCCTGGACCACCAGCAGTTTGACTTTGTTGTCCGCATGATGAACTGTTGCCTGCAGGACTGCACGTCCCTGGATGAGCACGGCATTGCGGCTGCTCTGCTGCCCCTGGTCACTGCCTTCTGCCGGAAGCTGAGCCCAGGGGTGACGCAGTTTGCATACAGCTGCGTGCAGGAGCACGTGGTGTGGAGCACACCCCAGTTCTGGGAGGCCATGTTCTATGGAGATGTGCAGACCCACATCCGGGCCCTCTACCTGGAGCCCCCTGAAGACCAGTCCCCCTCCCAGGAGGCTGGGGAAGTCCCAGCCCAGGAGGATGAGCGCTCTGCCCTGGATGTGGCTTCGGAGCAGCGGCGCCTGTGGCCAACCCTGAGCCGAGAGAAGCAGCAGGAGCTGGTGCAGAAGGAAGAGAGCACAGTGTTCAGCCAGGCCATCCATTATGCCAACCGCATGAGCTACCTCCTGCTGCCTCTGGACAGCAGCAAGAGCCGCCTTCTGCGGGAGCGGGCAGGGCTGGGGGACCTCGAGAGCGCCAGCAACAGCCTGGTCACCAACAGCATGGCGGGCAGTGTGGCTGAGAGCTACGACACAGAGAGTGGCTTCGAGGATGCAGAGACCTGTGACGTGGCTGGGGCTGTGGTCCGCTTCATCAACCGCTTCGTGGACAAGGTCTGCACCGAGAGCGGGGTCACCAGCGACCACCTCAAGGGACTGCACGTCATGGTGCCAGACATTGTGCAGATGCACGTAGAGACCCTGGAGGCCGTGCACCGTGAGAGCAAGCGGCTGCCCCCTATCCAGAAGCCCAAGCTGCTGCGGCCTCGCCTGCTGCCTGGGGAGGAGTGTGTCCTGGACGGCCTTCGAGTGTACCTGCTGCCGGATGGCCGAGAAGGAGCCACGGGGGGCTCCGGAGGGGGCCCCGCCCTGCTCCCGGCTGAGGGCGCTGTCTTCCTCACCACGTACCGGGTCGTCTTCACGGGGATGCCCACCGACCCCCTGGTGGGGGAACAGGTGGTGGTCCGCTCCTTCCCGTTGGCCGCGCTGACCAAGGAGAAGCGCATTAGTGTCCAGACCCCCATGGACCAGCTCCTGCAGGATGGGCTGCAGCTCCGCTCCTGCACATTCCAGTTGCTGAAAATGGCCTTTGATGAGGAGGTGGGATCCGACAGTGCTGAGCTCTTCCGCAAGCAGCTGCACAAGCTGCGGTACCCGGCGGACATAAGGGGCACCTTTGCGTTCACTCTGGGCTCCGCCTACACACCTAGCAAGCCAGCCCGGACTGCCAAGGACAAGGGCCCTTCCTTCAGAACCCTGTCCCGGAACCTGGTGAAGAACGCCAAGAAGACGATCGGGCGTCAGTATGTCACGCGAAAGAGGTACAACCCCCCAGGCTGGGAGCAGCACGGCCAGCCACCCACTGAGGACCAGGAGGACGAGATCTCAGTGTCGGAGGAGTCGGAGCCCAGCACGCTGACCCCATCCTCAGCCCTGAAGCCCTCAGACCGCATGACTATGAGCAGCCTGGTGGAACGGGCGTGCTGCCGTGACTACCAGCGCCTGGGCCTGGGCACCCTGAGCAGCAGCCTCAGCCGGGCCAAGTCTGAGCCCTTCCGCATCTCCCCGGTGAACCGCATGTACGCCATCTGCCGCAGCTACCCAGGGCTGCTGATCGTTCCCCAGAGTATCCAGGACAATGCCCTGCAGCGCGTGTCCCGCTGTTACCGCCAGAACCGCTTCCCTGTGGTCTGCTGGCGCAGTGGGCGCTCCAAGGCTGTGCTGCTGCGCTCTGGGGGCCTGCACGGCAAGGGTGTTGTTGGCCTCTTCAAGGCCCAGAACGCGCCTTCTCCAGGTCAGTCCCAGGCAGACTCCAGCAGCTTGGAGCAGGAGAAGTACCTACAGGCCGTGGTCAGCTCCATGCCCCGCTATGCTGACGCATCAGGACGCAACACGCTCAGTGGCTTCTCCTCAGCCCACATGGGCAGTCATGTGCCCAGCCCCAGAGCCAGGGTCACCACGCTGTCTAACCCCATGGCGGCCTCGGCCTCCAGACGGACTGCGCCCCGAGGTAAGTGGGGGAGCGTTCGGGCCAGCGGACGCAGCAGTGGGCTCAGTACCGATGTGGGCTCCCGGCTAGCCAGCAGAGATGGCCTGAGTGCCCCCCAGGCCAACGGGGCCCCTCCTGACCCAGGCTTTCTGCGGCCCCAGCGTGCAGCCCTCTACATCATTGGGGACAAAGCCCAGCTCAAGGGTGTGCGGCAGGACCCTCTGCAGCAGTGGGAGCTGGTACCCATTGAGGTGTTCGAGTCCCGGCAGGTGAAGGCCAGCTTCAAGAAGCTGCTGAAGGCCTGTGTGCCAGGCTGCCCGGCCACTGAGCCTGGCCCAGCCTCCTTCCTGCGCTCGCTGGAGGACTCGGAGTGGCTGATCCAGATCCACAGACTGCTGCAGATCTCAGTGCTGGTAGTTGAGCTCCTGGATGCAGGCTCCTCTGTCCTGGTGAGCCTGGAGGATGGCTGGGACGTCACCACCCAGGTGGTGTCCTTGGTGCAGCTGCTCTCAGACCCCTTCTATCGCACGCTGGAAGGCTTCCGTCTGCTGGTGGAGAAGGAATGGCTGTCTTTCGGGCATCGCTTCAGCCACCGTGGGGCCCACACCCTGGCTGGTCAGAGCAGTGGCTTCACACCTGTCTTCCTGCAGTTCCTCGACTGTGTGTACCAGGTCCATTTGCAGTTCCCCATGGAGTTTGAGTTCAGCCAGTTCTACCTCAAGTTCCTTGGTTACCATCATGCATCCCGCCGTTTCCGCACCTTCCTGCTGGACTCTGACTATGAGCGCATTGAGCTGGGGCTGCTGTATGAGGAGAAGGGCGAGCGCAAGGGCCAGCTGGTGTGCAGGTCTGTGTGGGAGTATGTGGACAGGCTGAGCAAGAGGACACCTGTGTTCTACAATTACATGTATGCACCCGAGGACACGGAGGTCCTGCGGCCCTACAGCAACGTGTCCAACCTGAAGGTGTGGGATTTCTACACGGAGGAGACACTGGCTGAGGGCCCCCCCTATGACTGGGAGCTGGCCCAGGGACCTCCTGAGCCCCCAGAGGAGGAGCGGCCTGACGGCAGTGCTCACCAAAGCCGGCGCCGTGTGGTGTGGCCGTGCTACGACAGCCGGCCTCGAGTGCAGCCCGATGCCCTCTCGCGCCTGCTGCAGGAGCTGCAGCGGCTGGAGACAGAGCTGGGCCGGCCTTCTGAGCGCTGGAAGGATACCTGGGACCGTGTGAAAGCTGCTCAGCGCCTAGAAGTTCGGCCAGATGGACGTGGCACCCCCAGCTCCCTGCTAGTGTCCAGCGTGCCTCACCACCGCCGCTCGCTGGGCGTGTACCTGCAGGAGGGGCCTATGGGCTCCACGCTGAGTCTCAGCCTCGACAGTGACCAGAGCAGTGGCTCGGCCACATCTGCCCGCCAGGCTGCCCGCCGCAGCACCAGCACCCTGTACAGCCAGTTCCAGACAGCCGAAAGTGAGAACAGGTCCTACGAGGGCACCCTGTATAAGAAGGGGGCCTTCATGAAGCCCTGGAAGGCCCGCTGGTTCGTGCTGGACAAGACCAAGCACCAGCTGCGTTACTATGACCATCGTGTGGACACAGAGTGCAAGGGTGTCATTGACTTGGCGGAAGTAGAGGCTGTGGGGCCAGGCACACCCACCATGGGCGCCCCTAAGACTGTGGACGAGAAGGCCTTCTTTGACGTGAAGACGACGCGTCGCGTTTACAACTTCTGTGCCCAGGACGTGCCCTCAGCCCAGCAGTGGGTGGACCGAATCCAGAGTTGCCTGTCGGACGCCTGA

Related Sequences

XP_004845368.1 Protein

Sbf1 PREDICTED: myotubularin-related protein 5 isoform X2 [Heterocephalus glaber]

Length: 1889 aa      View alignments
>XP_004845368.1
MSWEQHLPGQRAPGHGSGEGQGQILQRFPEKDWEDNPFPQGIELFCQPSGWQVCPERNPPTFFVAVLTDINSERHYCACLTFWEPVEPKQEAVGTKGTVEREEEADERGQGQLSPATPVQPGQLYAPKTLVLVSRLDHTEVFRNSLGLIYTIHVEGLNVCLENVIGNLLTCTVPLAGGSQRTISLGAGDRQVIQTPLADSLPVSRCSVALLFRQLGITNVLSLFCAALTEHKVLFLSRSYQRLADACRGLLALLFPLRYSFTYVPILPAQLLEVLSTPTPFIIGVNAAFQAETQELLDVIVADLDGGTVAVPECVHIPPLPEPLQSQTHSVLSMVLDPELELADLAFPPPTVSTSSLKMQDKELRAVFLRLFAQLLQGYRWCLHIVRIHPEPVIRFHKAAFLGQRGLVEDDFLMKVLEGMAFAGFVSERGVPYRPTDLFDELVAHEVARMRADENHPQRVLRHVQELAEQLYKNENPYPAVSMHKVQRPGEAGHPWRAPRPFPRLDEGTVQWIVDQAAAKMQGAPPAVRAERRSTVPSGSPMTAIAERSSGPHINSARRLEVVRSCISCVFEGKMLEAKKLLPAVLRALKGRAARRCLAQELHVHVQQNRAVLDHQQFDFVVRMMNCCLQDCTSLDEHGIAAALLPLVTAFCRKLSPGVTQFAYSCVQEHVVWSTPQFWEAMFYGDVQTHIRALYLEPPEDQSPSQEAGEVPAQEDERSALDVASEQRRLWPTLSREKQQELVQKEESTVFSQAIHYANRMSYLLLPLDSSKSRLLRERAGLGDLESASNSLVTNSMAGSVAESYDTESGFEDAETCDVAGAVVRFINRFVDKVCTESGVTSDHLKGLHVMVPDIVQMHVETLEAVHRESKRLPPIQKPKLLRPRLLPGEECVLDGLRVYLLPDGREGATGGSGGGPALLPAEGAVFLTTYRVVFTGMPTDPLVGEQVVVRSFPLAALTKEKRISVQTPMDQLLQDGLQLRSCTFQLLKMAFDEEVGSDSAELFRKQLHKLRYPADIRGTFAFTLGSAYTPSKPARTAKDKGPSFRTLSRNLVKNAKKTIGRQYVTRKRYNPPGWEQHGQPPTEDQEDEISVSEESEPSTLTPSSALKPSDRMTMSSLVERACCRDYQRLGLGTLSSSLSRAKSEPFRISPVNRMYAICRSYPGLLIVPQSIQDNALQRVSRCYRQNRFPVVCWRSGRSKAVLLRSGGLHGKGVVGLFKAQNAPSPGQSQADSSSLEQEKYLQAVVSSMPRYADASGRNTLSGFSSAHMGSHVPSPRARVTTLSNPMAASASRRTAPRGKWGSVRASGRSSGLSTDVGSRLASRDGLSAPQANGAPPDPGFLRPQRAALYIIGDKAQLKGVRQDPLQQWELVPIEVFESRQVKASFKKLLKACVPGCPATEPGPASFLRSLEDSEWLIQIHRLLQISVLVVELLDAGSSVLVSLEDGWDVTTQVVSLVQLLSDPFYRTLEGFRLLVEKEWLSFGHRFSHRGAHTLAGQSSGFTPVFLQFLDCVYQVHLQFPMEFEFSQFYLKFLGYHHASRRFRTFLLDSDYERIELGLLYEEKGERKGQLVCRSVWEYVDRLSKRTPVFYNYMYAPEDTEVLRPYSNVSNLKVWDFYTEETLAEGPPYDWELAQGPPEPPEEERPDGSAHQSRRRVVWPCYDSRPRVQPDALSRLLQELQRLETELGRPSERWKDTWDRVKAAQRLEVRPDGRGTPSSLLVSSVPHHRRSLGVYLQEGPMGSTLSLSLDSDQSSGSATSARQAARRSTSTLYSQFQTAESENRSYEGTLYKKGAFMKPWKARWFVLDKTKHQLRYYDHRVDTECKGVIDLAEVEAVGPGTPTMGAPKTVDEKAFFDVKTTRRVYNFCAQDVPSAQQWVDRIQSCLSDA