Sequence details NCBI ID: XM_004845177.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Sema5a
Gene Name sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5A, transcript variant X2
Entrez Gene ID 101721335

Database interlinks

Part of NW_004624751.1 (Scaffold)

For more information consult the page for NW_004624751.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

SEMA5A ENSCPOG00000006362 (Guinea pig)

Gene Details

sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5A

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000005732, Guinea pig)

Protein Percentage 94.5%
CDS Percentage 91.61%
Ka/Ks Ratio 0.05341 (Ka = 0.0241, Ks = 0.4514)

SEMA5A ENSG00000112902 (Human)

Gene Details

sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5A

External Links

Gene Match (Ensembl Protein ID: ENSP00000371936, Human)

Protein Percentage 94.78%
CDS Percentage 89.28%
Ka/Ks Ratio 0.04143 (Ka = 0.0245, Ks = 0.5906)

Sema5a ENSMUSG00000022231 (Mouse)

Gene Details

sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5A

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000069024, Mouse)

Protein Percentage 93.2%
CDS Percentage 86.05%
Ka/Ks Ratio 0.0399 (Ka = 0.0324, Ks = 0.8111)

Sema5a ENSRNOG00000011977 (Rat)

Gene Details

sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5A (Sema5a), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000016506, Rat)

Protein Percentage 93.1%
CDS Percentage 85.49%
Ka/Ks Ratio 0.03758 (Ka = 0.0329, Ks = 0.8754)

Genome Location

Sequence Coding sequence

Length: 3222 bp    Location: 6797934..6429814   Strand: -
Raw sequence   
>XM_004845177.1
ATGAAGGGAGCCTGCGCCCTCGCGTGGCTGTTCTCCAGCCTGGAGCTGTGGAGACTGGCCCAGCTGGAGGCACAAGATGCCCAGTGCCAGAGAGCTGAGCACCCAGTCATTTCCTACAAAGAAATTGGCCCCTGGTTGCGGGAGTTCAGAGCGAAGAATGCTGTGGATTTCTCGCAGTTAACATTTGACCCAGGACAGAAAGAGCTTGTGGTAGGAGCAAGAAACTACCTCTTCAGATTGCAGCTAGAGGACCTATCTCTTATCCAGGCTGCGGAGTGGGCATGTGACGAGGCGACCAAGAAGGCCTGCTACAGCAAAGGCAAATCGAAGGAGGAGTGTCAGAACTACATCCGGGTGCTTTTGGTGGGTGGCGACCGATTATTCACCTGTGGAACCAACGCTTTCACACCTGTGTGCACCAACCGCTCGTTGAGCAACCTGACTGAGATCCACGATCAGATCAGTGGCATGGCCCGCTGTCCCTACAGTCCCCAGCACAACTCCACAGCCCTCCTCACGGCTGGCGGTGAGCTCTATGCCGCGACAGCCATGGATTTTCCGGGACGAGATCCTGCCATTTACCGAAGCCTGGGGCTTTTGCCTCCGCTCCGCACTGCGCAGTACAACTCCAAGTGGCTCAACGAACCGAACTTTGTATCCTCCTATGACATCGGAAATTTCACCTACTTTTTTTTCCGAGAAAATGCTGTGGAGCATGACTGTGGGAAGACAGTGTTCTCCAGGGCTTCCCGGGTCTGCAAGAACGACATCGGGGGGCGCTTCCTGCTGGAGGACACTTGGACCACCTTCATGAAGGCGCGCCTGAACTGCTCCCGGCCCGGGGAGGTCCCCTTCTACTACAACGAGCTGCAGAGCACTTTCTTGCTGCCCGAGCTGGACTTGATCTATGGCATCTTTACCACCAACGTCAACAGCATTGCTGCCTCGGCCGTATGTGTCTTCAACCTGAGCGCCATCTCGCAGGCCTTCAATGGGCCCTTCAAGTTCCAGGAGAACTCTCGCTCCGCCTGGCTACCTTATCCGAACCCCAACCCCAACTTCCAGTGTGGCACCGTGGACCAGGGCCTGTATGTGAATCTTACAGAGAGGAACCTGCAGGACGCTCAGAAGTTCATCCTGATGCACGAGGTGGTGCAGCCGGTGTCCCCAGTGCCCTCCTTCCTAGAGGACAACAGCCGCTTCTCCCACGTGGTGGTGGACGTGGTGCAGGGCAGAGACTTGCTCTTCCACATCATCTACCTGGCCACAGATTATGGCACCATTAAGAAAGTACGCGCACCCCTGAATCAGACCTCAAGCAGCTGTTTGCTGGAAGAGATCGAGCTCTTCCCAGAGAGGAGGAGGGAGCCCATCCGGAGCCTGCAGATCCTGCACAGCCAGAGCGTCCTGTTTGTGGGTCTGCGGGAGCACGTGGCCAAGATCCCCCTGAAGAGGTGCCGGTTCTACCGCACTCGCAGCACCTGCATCGGGGCCCAGGACCCTTACTGTGGCTGGGACGTCGTGATGAACAAGTGCACCAGCCTGGAGGAGAGCCTCAGCATGACACGGTGGGAACAGAGCATCTCCGCCTGCCCGACCCGGAATCTCACTGTGGATGGGCGCTTCGGCCAGTGGTCTCCGTGGACGCCCTGCAGCCACACGGACGGCAGTGCCGTGGGGTCCTGCCTGTGTCGGTCCCGCTCCTGTGACAGCCCAGCCCCACAGTGCGGCGGCTGGCAGTGCGAGGGGCCCAGCATGGAGATCGCCAACTGCTCCAGGAATGGAGGCTGGACCCCCTGGACCTCCTGGTCACCCTGCAGCACAACCTGTGGCATTGGCTTCCAGGTGCGGCAGCGGTCCTGCAGCAACCCCACACCGAGGCACGGGGGCCGGGTGTGTGTGGGACAGAACCGCGAGGAAAGATACTGCAATGAACATTTGCTCTGCCCGCCGCACATGTTCTGGACAGGCTGGGGGCCTTGGGAACGGTGCACTGCCCAGTGCGGGGGTGGCATTCAGGCTCGCCGCAGAACCTGTGAGAACGGGCCCGACTGTGCAGGCTGCAACGTGGAGTACCAGCCTTGCAACACCAACCCGTGTCCCGAGCTGAAGAAAACCACACCCTGGACACCATGGACGCCCGTCAACATCTCTGACAATGGCGGCCACTATGAGCAGCGATTCCGATACACCTGCAAAGCCCGCCTGCCAGATCCGAACCTGCTGGAGGTGGGAAGGCAGAGAATCGAAATGCGGTACTGTTCTAGTGACGGAACCAGCGGCTGCTCCACGGATGGGCTTTCCGGGGACTTCCTGCGCGCAGGGCGGTACTCGGCCCACACAGTCAACGGCGCGTGGTCAGCCTGGACGTCCTGGTCCCAGTGCAGCCGCGACTGCAGCAGGGGCATTCGGAACCGGAAGCGCGTGTGCAACAACCCGGAGCCCAGGTACGGAGGGATGCCGTGCCTGGGCCCGTCCGTGGAGTACCAGGAGTGCAACATCTTGCCCTGCCCAGTGGACGGTGCGTGGTCATGCTGGTCGTCCTGGTCACAGTGCTCGGCAACATGTGGTGGCGGACACTACATGAGGACACGCTCCTGCACAAACCCCGCCCCGGCCTACGGAGGGGACATCTGCCTGGGGCTGCACACTGAAGAGGCCCTGTGTAACACACAGCCCTGCCCAGAGAGCTGGTCTGAGTGGTCCGACTGGTCTGGGTGCGACCCAGCTGGCGTCCAGTTCCGCACCCGCCAGTGCATCCTTCCCTTCCCGGTGGGCAGCCAGTGCTCCGGGAACAACACCGAGAGCCGGCCGTGCGCTCTCGACTCTAACTTCATCCCAGAAGTATCCGTGGCAAGATCCAGTAGTGTAGAAGAGAAAAGGTGTGGAGAGTTCAACATGTTCCACATGATCGCTGTGGGCCTGAGCAGCTCCATCCTCGGCTGCCTCCTCACCCTGCTTGTCTACACCTACTGCCAGCGCTACCAGCAGCAATCCCATGACGCAACTGTCATCCACCCAGTGTCTCCTGCCCCTCTCAACACCAGCATAACCAACCACATCAACAAACTGGACAAGTACGACTCAGTGGAGGCCATCAAGGCATTTAACAAAAACAACCTGATTCTCGAAGAAAGAAACAAATACTTCAACCCACATCTCACTGGAAAGACCTATTCTAATGCCTACTTTACAGATCTCAATAATTATGATGAGTACTAA

Related Sequences

XP_004845234.1 Protein

Sema5a PREDICTED: semaphorin-5A isoform X2 [Heterocephalus glaber]

Length: 1073 aa      View alignments
>XP_004845234.1
MKGACALAWLFSSLELWRLAQLEAQDAQCQRAEHPVISYKEIGPWLREFRAKNAVDFSQLTFDPGQKELVVGARNYLFRLQLEDLSLIQAAEWACDEATKKACYSKGKSKEECQNYIRVLLVGGDRLFTCGTNAFTPVCTNRSLSNLTEIHDQISGMARCPYSPQHNSTALLTAGGELYAATAMDFPGRDPAIYRSLGLLPPLRTAQYNSKWLNEPNFVSSYDIGNFTYFFFRENAVEHDCGKTVFSRASRVCKNDIGGRFLLEDTWTTFMKARLNCSRPGEVPFYYNELQSTFLLPELDLIYGIFTTNVNSIAASAVCVFNLSAISQAFNGPFKFQENSRSAWLPYPNPNPNFQCGTVDQGLYVNLTERNLQDAQKFILMHEVVQPVSPVPSFLEDNSRFSHVVVDVVQGRDLLFHIIYLATDYGTIKKVRAPLNQTSSSCLLEEIELFPERRREPIRSLQILHSQSVLFVGLREHVAKIPLKRCRFYRTRSTCIGAQDPYCGWDVVMNKCTSLEESLSMTRWEQSISACPTRNLTVDGRFGQWSPWTPCSHTDGSAVGSCLCRSRSCDSPAPQCGGWQCEGPSMEIANCSRNGGWTPWTSWSPCSTTCGIGFQVRQRSCSNPTPRHGGRVCVGQNREERYCNEHLLCPPHMFWTGWGPWERCTAQCGGGIQARRRTCENGPDCAGCNVEYQPCNTNPCPELKKTTPWTPWTPVNISDNGGHYEQRFRYTCKARLPDPNLLEVGRQRIEMRYCSSDGTSGCSTDGLSGDFLRAGRYSAHTVNGAWSAWTSWSQCSRDCSRGIRNRKRVCNNPEPRYGGMPCLGPSVEYQECNILPCPVDGAWSCWSSWSQCSATCGGGHYMRTRSCTNPAPAYGGDICLGLHTEEALCNTQPCPESWSEWSDWSGCDPAGVQFRTRQCILPFPVGSQCSGNNTESRPCALDSNFIPEVSVARSSSVEEKRCGEFNMFHMIAVGLSSSILGCLLTLLVYTYCQRYQQQSHDATVIHPVSPAPLNTSITNHINKLDKYDSVEAIKAFNKNNLILEERNKYFNPHLTGKTYSNAYFTDLNNYDEY