Details from NCBI annotation

Gene Symbol Rfx4
Gene Name regulatory factor X, 4 (influences HLA class II expression), transcript variant X1
Entrez Gene ID 101724281

Database interlinks

Part of NW_004624750.1 (Scaffold)

For more information consult the page for NW_004624750.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

RFX4 ENSCPOG00000001750 (Guinea pig)

Gene Details

regulatory factor X, 4 (influences HLA class II expression)

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000001581, Guinea pig)

Protein Percentage 94.41%
CDS Percentage 91.1%
Ka/Ks Ratio 0.04834 (Ka = 0.0243, Ks = 0.5025)

RFX4 ENSG00000111783 (Human)

Gene Details

regulatory factor X, 4 (influences HLA class II expression)

External Links

Gene Match (Ensembl Protein ID: ENSP00000350552, Human)

Protein Percentage 94.69%
CDS Percentage 86.44%
Ka/Ks Ratio 0.0399 (Ka = 0.0286, Ks = 0.7168)

Rfx4 ENSMUSG00000020037 (Mouse)

Gene Details

regulatory factor X, 4 (influences HLA class II expression)

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000051107, Mouse)

Protein Percentage 94.97%
CDS Percentage 87.3%
Ka/Ks Ratio 0.03127 (Ka = 0.0231, Ks = 0.7392)

Rfx4 ENSRNOG00000007360 (Rat)

Gene Details

regulatory factor X, 4 (influences HLA class II expression)

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000056437, Rat)

Protein Percentage 88.81%
CDS Percentage 83.16%
Ka/Ks Ratio 0.06671 (Ka = 0.0659, Ks = 0.9882)

Genome Location

Sequence Coding sequence

Length: 2208 bp    Location: 2869668..2723969   Strand: -
>XM_004844808.1
ATGCATTGTGGGTTACTGGAGGAACCCGACATGGATTCCACAGAGAGCTGGATTGAAAGATGTCTCAATGAAAGTGAAAACAAACGTTATTCCAGCCACGCATCTCTGGGCAATGTTTCTAATGATGAAAATGAGGAAAAAGAAAATAATAGAGCATCCAAGCCCCACTCCACGCCCGCCACACTGCAATGGCTGGAAGAAAACTATGAGATTGCAGAAGGCGTCTGCATCCCTCGCAGTGCCCTGTACATGCACTACCTGGACTTCTGTGAGAAGAACGACACCCAGCCTGTCAATGCCGCCAGCTTTGGGAAGATCATAAGGCAGCAGTTTCCACAGCTGACCACCAGGAGACTCGGGACCCGAGGACAGTCAAAGTACCATTACTACGGCATCGCGGTGAAGGAGAGCTCCCAGTACTACGACGTGATGTACTCCAAGAAAGGAGCCGCCTGGGTGAGCGACACGGGCAAGAAGGAAGTGAGCAAGCAGACGGTGGCATACTCGCCGCGCTCCAAGCTGGGCACACTGCTGCCCGAGTTCCCCAACATCAAGGACCTGACCCTGCCGGCCAGTCTCCCCGAGGAGAAGGTCTCCACCTTCATCATGATGTACCGGACGCACTGTCAGAGGATCCTGGACACGGTGATAAGAGCCAACTTTGACGAGGTTCAGAGCTTCCTCCTGCACTTTTGGCAAGGAATGCCGCCCCACATGCTGCCCGTGCTGGGCTCCTCCACCGTGGTGAACATCGTCGGTGTGTGCGACTCCATTCTCTACAAGGCCATCTCCGGGGTGCTCATGCCCACCGTGCTGCAGGCACTCCCCGACAGCCTGACGCAGGTGATCCGGAAGTTTGCCAAGCAGCTGGATGAGTGGCTGAAGGTGGCCCTGCACAACCTCCCAGAAAATTTGCGAAACATCAAATTTGAATTGTCCAGGAGGTTTTCCCAAATCCTGAGACGGCAAACATCGCTCAATCACCTTTGCCAGGCATCCCGGACGGTGATCCACAGCGCTGACATCACATTCCAGATGCTGGAGGACTGGCGGAACGTGGACCTGAACAGCATCACCAAGCAGACCCTCTACACCATGGAGGACTCCCGCGAGGAGCACCGAAAGCTCATCATCCAGCTGTACCAGGAGTTCGACCACCTGCTGGAGGAGCAGTCGCCCATTGAGGCCTACATCGAGTGGCTGGACACCATGGTGGACCGCTGCGTCGTGAAGGTGGCCGCCAAGAGACAAGGGTCGCTGAGGAAGGTGGCCCAGCAGTTCCTCCTGATGTGGTCCTGCTTCGGCACCAGGGTGATCCGGGACATGACCTTGCACAGCGCGCCCAGCTTCGGCTCTTTCCACCTCATCCACCTGATGTTCGACGACTACGTGCTGTACCTGCTGGAGTCGCTGCACTGTCAGGAGCGTGCCAACGAGCTCATGCGGGCCATGAAGGGCGAAGGCGGCAGTGCGGAAGTTGGTGAAGAGGTCATCCTGACCGAGGCCGCCCCACCAACCCCTTCACCAGTGCCATCGTTTTCCCCCTCAAAATCTGCCACGTCTGTGGAGGTGCCGCCTCCCTCGTCCCCTGTCAGCAACCCGTCCCCCGAGTACACCGGGCTCAGCACTACAGGTGCAATGCAGTCCTACACGTGGTCTCTGACATACACAGTGACGACGGCTGCTGGGTCTCCGGCAGAAAACTCCCAACAGCTGCCCTGCATGCGGAGCACTCATGTGCCCGCCTCCTCCGTCGCACACCGGATACCAGTTTACCCCCACAGAGAGGAGCATGGGTACACCGGAAGCTATAACTATGGGAGCTATGGCAACCAGCACCCACACCCGATGCAGAGCCAGTACCCGGCCCTGGCCCACGACACGGCCCTCTCCGGCCCACTCCATTACTCTGCATACCACCGGAGCTCTGCCCAGTACCCTTTCAATAGCTCCACTTCCCGGATGGAGCCTTGTCTGATGAGCAGCACCCCCAGGCTGCACCCCACCGCAGTCACTCCCCGGTGGCCAGAGGTGCCCACAGCCAACACGTGTTACGCGAGCCCACCTGTGCACTCCACGAGGTATGGAAACTCTAGCGACATGTACACGCCCCTGAGCACGCGCAGGAACTCCGAGTATGAGCACATGCAACACTTTCCTGGCTTCGCTTACATCAATGGAGAAGCCTCCACAGGATGGGCCAAGTGA

Related Sequences

XP_004844865.1 Protein

Rfx4 PREDICTED: transcription factor RFX4 isoform X1 [Heterocephalus glaber]

Length: 735 aa      View alignments
>XP_004844865.1
MHCGLLEEPDMDSTESWIERCLNESENKRYSSHASLGNVSNDENEEKENNRASKPHSTPATLQWLEENYEIAEGVCIPRSALYMHYLDFCEKNDTQPVNAASFGKIIRQQFPQLTTRRLGTRGQSKYHYYGIAVKESSQYYDVMYSKKGAAWVSDTGKKEVSKQTVAYSPRSKLGTLLPEFPNIKDLTLPASLPEEKVSTFIMMYRTHCQRILDTVIRANFDEVQSFLLHFWQGMPPHMLPVLGSSTVVNIVGVCDSILYKAISGVLMPTVLQALPDSLTQVIRKFAKQLDEWLKVALHNLPENLRNIKFELSRRFSQILRRQTSLNHLCQASRTVIHSADITFQMLEDWRNVDLNSITKQTLYTMEDSREEHRKLIIQLYQEFDHLLEEQSPIEAYIEWLDTMVDRCVVKVAAKRQGSLRKVAQQFLLMWSCFGTRVIRDMTLHSAPSFGSFHLIHLMFDDYVLYLLESLHCQERANELMRAMKGEGGSAEVGEEVILTEAAPPTPSPVPSFSPSKSATSVEVPPPSSPVSNPSPEYTGLSTTGAMQSYTWSLTYTVTTAAGSPAENSQQLPCMRSTHVPASSVAHRIPVYPHREEHGYTGSYNYGSYGNQHPHPMQSQYPALAHDTALSGPLHYSAYHRSSAQYPFNSSTSRMEPCLMSSTPRLHPTAVTPRWPEVPTANTCYASPPVHSTRYGNSSDMYTPLSTRRNSEYEHMQHFPGFAYINGEASTGWAK