Sequence details NCBI ID: XM_004844670.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Pcgf1
Gene Name polycomb group ring finger 1, transcript variant X2
Entrez Gene ID 101697330

Database interlinks

Part of NW_004624749.1 (Scaffold)

For more information consult the page for NW_004624749.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

PCGF1 ENSCPOG00000012729 (Guinea pig)

Gene Details

polycomb group ring finger 1

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000011453, Guinea pig)

Protein Percentage 99.23%
CDS Percentage 96.91%
Ka/Ks Ratio 0.02462 (Ka = 0.0034, Ks = 0.1368)

PCGF1 ENSG00000115289 (Human)

Gene Details

polycomb group ring finger 1

External Links

Gene Match (Ensembl Protein ID: ENSP00000233630, Human)

Protein Percentage 99.23%
CDS Percentage 94.72%
Ka/Ks Ratio 0.01602 (Ka = 0.0036, Ks = 0.223)

Pcgf1 ENSMUSG00000069678 (Mouse)

Gene Details

polycomb group ring finger 1

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000090277, Mouse)

Protein Percentage 98.79%
CDS Percentage 91.5%
Ka/Ks Ratio 0.01295 (Ka = 0.0055, Ks = 0.4272)

Pcgf1 ENSRNOG00000008360 (Rat)

Gene Details

polycomb group ring finger 1 (Pcgf1), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000011173, Rat)

Protein Percentage 98.79%
CDS Percentage 91.77%
Ka/Ks Ratio 0.0148 (Ka = 0.0057, Ks = 0.384)

Genome Location

Sequence Coding sequence

Length: 780 bp    Location: 29005254..29007744   Strand: +
Raw sequence   
>XM_004844670.1
ATGGCGTCTCCTCAGGGGGGCCAGATTGCGATCGCGATGAGGCTCCGGAACCAGCTCCAGTCAGTGTACAAGATGGACCCGCTACGAAATGAGGAGGAGGTCCGAGTGAAGATCAAAGACCTGAACGAGCACATTGTTTGCTGCCTGTGCGCAGGCTACTTCGTGGACGCCACAACCATCACAGAGTGTCTTCATACTTTCTGCAAGAGTTGTATTGTGAAGTACCTCCAAACCAGCAAGTACTGCCCCATGTGCAACATTAAGATCCATGAGACACAGCCGCTGCTCAACCTCAAACTGGATCGGGTCATGCAGGACATCGTGTACAAACTAGTGCCTGGTTTGCAAGACAGTGAAGAAAAGCGGATTCGGGAATTCTACCAGTCCCGAGGCTTGGACAGGGTCACCCAGCCCAGTGGGGAAGAGCCAGCCCTGAGCAACCTTGGCCTCCCCTTCAGCAGCTTCGACCACTCTAAAGCCCACTACTACCGCTATGATGAGCAGCTGAGCTTATGCCTGGAGCGGCTGAGTTCTGGCAAAGACAAGAATAAAAGTGTTTTGCAGAACAAGTATGTCCGATGTTCTGTTAGAGCTGAGGTACGCCATCTGCGGAGGGTCCTGTGTCACCGCTTAATGCTAAATCCACAACATGTACAGCTCCTTTTTGACAATGAAGTTCTCCCTGATCACATGACAATGAAGCAGATATGGCTCTCCCGCTGGTTCGGCAAGCCATCCCCTTTGCTTTTACAATACAGTGTGAAAGAGAAGAGGAGGTAG

Related Sequences

XP_004844727.1 Protein

Pcgf1 PREDICTED: polycomb group RING finger protein 1 isoform X2 [Heterocephalus glaber]

Length: 259 aa      View alignments
>XP_004844727.1
MASPQGGQIAIAMRLRNQLQSVYKMDPLRNEEEVRVKIKDLNEHIVCCLCAGYFVDATTITECLHTFCKSCIVKYLQTSKYCPMCNIKIHETQPLLNLKLDRVMQDIVYKLVPGLQDSEEKRIREFYQSRGLDRVTQPSGEEPALSNLGLPFSSFDHSKAHYYRYDEQLSLCLERLSSGKDKNKSVLQNKYVRCSVRAEVRHLRRVLCHRLMLNPQHVQLLFDNEVLPDHMTMKQIWLSRWFGKPSPLLLQYSVKEKRR