Sequence details NCBI ID: XM_004844654.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Sema4f
Gene Name sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4F, transcript variant X1
Entrez Gene ID 101722750

Database interlinks

Part of NW_004624749.1 (Scaffold)

For more information consult the page for NW_004624749.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

SEMA4F ENSCPOG00000005867 (Guinea pig)

Gene Details

sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4F

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000005293, Guinea pig)

Protein Percentage 93.6%
CDS Percentage 92.73%
Ka/Ks Ratio 0.17579 (Ka = 0.0337, Ks = 0.1919)

SEMA4F ENSG00000135622 (Human)

Gene Details

sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4F

External Links

Gene Match (Ensembl Protein ID: ENSP00000350547, Human)

Protein Percentage 91.43%
CDS Percentage 89.91%
Ka/Ks Ratio 0.16661 (Ka = 0.0473, Ks = 0.2839)

Sema4f ENSMUSG00000000627 (Mouse)

Gene Details

sema domain, immunoglobulin domain (Ig), TM domain, and short cytoplasmic domain

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000000641, Mouse)

Protein Percentage 89.48%
CDS Percentage 86.88%
Ka/Ks Ratio 0.13178 (Ka = 0.0574, Ks = 0.4352)

Sema4f ENSRNOG00000006784 (Rat)

Gene Details

sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4F (Sema4f), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000009269, Rat)

Protein Percentage 89.74%
CDS Percentage 86.41%
Ka/Ks Ratio 0.11757 (Ka = 0.056, Ks = 0.4762)

Genome Location

Sequence Coding sequence

Length: 2313 bp    Location: 28855128..28828826   Strand: -
Raw sequence   
>XM_004844654.1
ATGCTGGCCTGGGATGCAAGGCCCCGCCCGGGCCCCGGGCCGCCTCTGGCCTTACCCTTCCCGCTGGTACTGCTCATGGTGTTGAGTGGCTCTGTGTCCGGCCGCGTCCCCCGTTCGGTTCCCAGGACCTCGCTTCCCATCTCCGAGGCTGACGCCTATCTCACCAGGTTTGCTGTCCCTCATACATACGATTACTCTGTTCTCCTTGTGGATCCTGCTACCCAAACTCTTTATGTCGGCGCCCGAGACACCATCTTCGCTTTATCTCTGCCCTTCTCAGGGGAGAGACCCCGAAGGATTGACTGGATGGTGCCTGAGGCTCACAGACAGAACTGTAAGAAGAAAGGCAAGAAAGAGGATGAATGTCACAATTTTGTCCAGATTCTCGTCATTGCCAATGCCTCTCACCTCCTCACTTGTGGCACCTTCGCTTTTGATCCGAAGTGCGGGGTTATTGATGTGTCCAGTTTCCAGCAGGTTGAAAGACTTGAGAGTGGCCGGGGGAAATGTCCTTTTGAGCCAGCTCAGCGGTCAGCAGCTGTAATGGCTGGGGGGATTCTCTATGCTGCCACTGTGAAAAACTACCTGGGGACGGAGCCAATTATCTCCCGGGCTGTGGGTCGCGCTGAGGACTGGATTCGCACAGAGACCTTGCCAGCCTGGCTTAATGCCCCAGCCTTTGTCGAAGCCGTGGCCCTGAGTCCAGCCGAGTGGGGGGATGAAGATGGTGATGACGAAATCTACTTCTTCTTTACGGAGACTTCCCGAACATTTGACTCATATGAGCACATCAAGGTCCCACGGGTGGCCCGTGTGTGTGCGGGGGACCTTGGGGGCCGGAAGACCCTTCAGCAAAGGTGGACAACATTCCTGAAGGCTGACCTGCTGTGTCCAGGCCCTGAGCATGGCCGAGCCTCCACTGTCCTGCAGGACATGGCTGAGCTTCGACCTGATCTTGGAATAGGAACCCCCGTCTTCTATGGCATCTTCTCTTCCCAGTGGGAAGGGGCTGCCATCTCTGCTATCTGTGCCTTCAGACCCCAAGACATTCGGACAGTATTGAATGGTTCATTCAGAGAGCTAAAACATGACTGCAACAGGGGACTACCTGTCATGGACAATGATGTGCCCCAGCCCAGACCTGGAGAGTGTATCACCAAGAACATGAAGCTCCAGCAGTTTGGGTCATCACTCTCCTTGCCTGATCGAGTGCTCACCTTCATCCGGGATCACCCACTCATGGACAGGCCAGTGTTTCCCGCTGATGGTCATCCCCTGCTGGTCACTACGGATACAGCCTATCTCAGAGTGGTGGCCCACAGGGTGACTAGCCTCTCAGGGAAAGAGTATGATGTGCTCTACCTGGGTACAGAGGATGGACACTTGCACCGAGCAGTATGCATTGGAGCCCAGCTTAGTGTCCTTGAGGATCTGGCGTTGTTCCCAGAGCCACAGCCAGTTGAAAACATGAAATTATACCATGGCTGGCTCCTGGTTGGCTCCCGTACTGAGGTGACACAAGTGAACACAATCAACTGTGGTCGTCTCCTGAGCTGCTCAGAGTGTATCCTGGCCCAGGACCCTGCCTGTGCTTGGAGCTTCCAGCTAGATTCATGTGTGGCCCATGCTGGGGAGCTCCAAGGGTTGGTCCAAGACATAGAGTCAGCAGATGTCTCTTCTTTGTGTCCCAAAGAGCCTGGAGAACACCCAGTAGTGTTTGAAGTTCCTGTGGCCACATCTGCACATGTGGTCTTGCCATGTTCCCCCAGCTCAGCATGGGCATCCTGTGTGTGGCATCAGCCCAGCGGAATGACTGCACTCACCCCCCGGCGTGATGGGCTAGAGGTGGTGGTGAGCCCAGGGGCCATGGGTGCTTACGCCTGTGAATGTCAGGAGGGTGGGGCAGCCCGTGTGGTAGCAGCTTACAGCTTGGTGTGGGGCAGCCACCAGGGCCCCTCAAACCGAGCCCACACAGTGGGGGCTGGACTGATTGGCTTCTTCCTGGGGGTTCTTGTAGCATCTCTGACTCTCCTCTTGATTGGTCGGTGTCAGCAGAGACGGCAACAGAGGGAACTTCTGGCTAGAGATAAGGTGGGCTTAGACCTAGGGGCCCTACCGTCTGGGACCACAAGCTACAGCCAAGACCCTCCCTCCCCTTCTCCTGAAGATGAGCGGTTGCCTCTGGCCCTGGCCAAGAGGGGTAGTGGCTTTGGTGGCTTCCCTCCACCCTTCCTGCTTGATCCTTGCTCGAGCCCGGCCCATATTAGGCTCACCGGGGCTCCACTGGCCACATGTGATGAAACATCCATCTAG

Related Sequences

XP_004844711.1 Protein

Sema4f PREDICTED: semaphorin-4F isoform X1 [Heterocephalus glaber]

Length: 770 aa      View alignments
>XP_004844711.1
MLAWDARPRPGPGPPLALPFPLVLLMVLSGSVSGRVPRSVPRTSLPISEADAYLTRFAVPHTYDYSVLLVDPATQTLYVGARDTIFALSLPFSGERPRRIDWMVPEAHRQNCKKKGKKEDECHNFVQILVIANASHLLTCGTFAFDPKCGVIDVSSFQQVERLESGRGKCPFEPAQRSAAVMAGGILYAATVKNYLGTEPIISRAVGRAEDWIRTETLPAWLNAPAFVEAVALSPAEWGDEDGDDEIYFFFTETSRTFDSYEHIKVPRVARVCAGDLGGRKTLQQRWTTFLKADLLCPGPEHGRASTVLQDMAELRPDLGIGTPVFYGIFSSQWEGAAISAICAFRPQDIRTVLNGSFRELKHDCNRGLPVMDNDVPQPRPGECITKNMKLQQFGSSLSLPDRVLTFIRDHPLMDRPVFPADGHPLLVTTDTAYLRVVAHRVTSLSGKEYDVLYLGTEDGHLHRAVCIGAQLSVLEDLALFPEPQPVENMKLYHGWLLVGSRTEVTQVNTINCGRLLSCSECILAQDPACAWSFQLDSCVAHAGELQGLVQDIESADVSSLCPKEPGEHPVVFEVPVATSAHVVLPCSPSSAWASCVWHQPSGMTALTPRRDGLEVVVSPGAMGAYACECQEGGAARVVAAYSLVWGSHQGPSNRAHTVGAGLIGFFLGVLVASLTLLLIGRCQQRRQQRELLARDKVGLDLGALPSGTTSYSQDPPSPSPEDERLPLALAKRGSGFGGFPPPFLLDPCSSPAHIRLTGAPLATCDETSI