Sequence detailsNCBI ID: XM_004844654.1 (Coding sequence)  Best Hit

Details from NCBI annotation

Gene Symbol Sema4f
Gene Name sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4F, transcript variant X1
Entrez Gene ID 101722750

Database interlinks

Part of NW_004624749.1 (SequenceType object (1))

For more information consult the page for NW_004624749.1 (SequenceType object (1))

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

SEMA4FENSCPOG00000005867 (Guinea pig)

Gene Details

sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4F

External Links

Gene Match(Ensembl Protein ID:ENSCPOP00000005293, Guinea pig)

Protein Percentage 93.6%
CDS Percentage 92.73%
Ka/Ks Ratio 0.17579 (Ka = 0.0337, Ks = 0.1919)

SEMA4FENSG00000135622 (Human)

Gene Details

sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4F

External Links

Gene Match(Ensembl Protein ID:ENSP00000350547, Human)

Protein Percentage 91.43%
CDS Percentage 89.91%
Ka/Ks Ratio 0.16661 (Ka = 0.0473, Ks = 0.2839)

Sema4fENSMUSG00000000627 (Mouse)

Gene Details

sema domain, immunoglobulin domain (Ig), TM domain, and short cytoplasmic domain

External Links

Gene Match(Ensembl Protein ID:ENSMUSP00000000641, Mouse)

Protein Percentage 89.48%
CDS Percentage 86.88%
Ka/Ks Ratio 0.13178 (Ka = 0.0574, Ks = 0.4352)

Sema4fENSRNOG00000006784 (Rat)

Gene Details

sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4F (Sema4f), mRNA

External Links

Gene Match(Ensembl Protein ID:ENSRNOP00000009269, Rat)

Protein Percentage 89.74%
CDS Percentage 86.41%
Ka/Ks Ratio 0.11757 (Ka = 0.056, Ks = 0.4762)

Genome Location

Sequence SequenceType object (2)

Length: 2313 bp    Location: 28855128..28828826   Strand: -
Raw sequence   
>XM_004844654.1
ATGCTGGCCTGGGATGCAAGGCCCCGCCCGGGCCCCGGGCCGCCTCTGGCCTTACCCTTCCCGCTGGTACTGCTCATGGTGTTGAGTGGCTCTGTGTCCGGCCGCGTCCCCCGTTCGGTTCCCAGGACCTCGCTTCCCATCTCCGAGGCTGACGCCTATCTCACCAGGTTTGCTGTCCCTCATACATACGATTACTCTGTTCTCCTTGTGGATCCTGCTACCCAAACTCTTTATGTCGGCGCCCGAGACACCATCTTCGCTTTATCTCTGCCCTTCTCAGGGGAGAGACCCCGAAGGATTGACTGGATGGTGCCTGAGGCTCACAGACAGAACTGTAAGAAGAAAGGCAAGAAAGAGGATGAATGTCACAATTTTGTCCAGATTCTCGTCATTGCCAATGCCTCTCACCTCCTCACTTGTGGCACCTTCGCTTTTGATCCGAAGTGCGGGGTTATTGATGTGTCCAGTTTCCAGCAGGTTGAAAGACTTGAGAGTGGCCGGGGGAAATGTCCTTTTGAGCCAGCTCAGCGGTCAGCAGCTGTAATGGCTGGGGGGATTCTCTATGCTGCCACTGTGAAAAACTACCTGGGGACGGAGCCAATTATCTCCCGGGCTGTGGGTCGCGCTGAGGACTGGATTCGCACAGAGACCTTGCCAGCCTGGCTTAATGCCCCAGCCTTTGTCGAAGCCGTGGCCCTGAGTCCAGCCGAGTGGGGGGATGAAGATGGTGATGACGAAATCTACTTCTTCTTTACGGAGACTTCCCGAACATTTGACTCATATGAGCACATCAAGGTCCCACGGGTGGCCCGTGTGTGTGCGGGGGACCTTGGGGGCCGGAAGACCCTTCAGCAAAGGTGGACAACATTCCTGAAGGCTGACCTGCTGTGTCCAGGCCCTGAGCATGGCCGAGCCTCCACTGTCCTGCAGGACATGGCTGAGCTTCGACCTGATCTTGGAATAGGAACCCCCGTCTTCTATGGCATCTTCTCTTCCCAGTGGGAAGGGGCTGCCATCTCTGCTATCTGTGCCTTCAGACCCCAAGACATTCGGACAGTATTGAATGGTTCATTCAGAGAGCTAAAACATGACTGCAACAGGGGACTACCTGTCATGGACAATGATGTGCCCCAGCCCAGACCTGGAGAGTGTATCACCAAGAACATGAAGCTCCAGCAGTTTGGGTCATCACTCTCCTTGCCTGATCGAGTGCTCACCTTCATCCGGGATCACCCACTCATGGACAGGCCAGTGTTTCCCGCTGATGGTCATCCCCTGCTGGTCACTACGGATACAGCCTATCTCAGAGTGGTGGCCCACAGGGTGACTAGCCTCTCAGGGAAAGAGTATGATGTGCTCTACCTGGGTACAGAGGATGGACACTTGCACCGAGCAGTATGCATTGGAGCCCAGCTTAGTGTCCTTGAGGATCTGGCGTTGTTCCCAGAGCCACAGCCAGTTGAAAACATGAAATTATACCATGGCTGGCTCCTGGTTGGCTCCCGTACTGAGGTGACACAAGTGAACACAATCAACTGTGGTCGTCTCCTGAGCTGCTCAGAGTGTATCCTGGCCCAGGACCCTGCCTGTGCTTGGAGCTTCCAGCTAGATTCATGTGTGGCCCATGCTGGGGAGCTCCAAGGGTTGGTCCAAGACATAGAGTCAGCAGATGTCTCTTCTTTGTGTCCCAAAGAGCCTGGAGAACACCCAGTAGTGTTTGAAGTTCCTGTGGCCACATCTGCACATGTGGTCTTGCCATGTTCCCCCAGCTCAGCATGGGCATCCTGTGTGTGGCATCAGCCCAGCGGAATGACTGCACTCACCCCCCGGCGTGATGGGCTAGAGGTGGTGGTGAGCCCAGGGGCCATGGGTGCTTACGCCTGTGAATGTCAGGAGGGTGGGGCAGCCCGTGTGGTAGCAGCTTACAGCTTGGTGTGGGGCAGCCACCAGGGCCCCTCAAACCGAGCCCACACAGTGGGGGCTGGACTGATTGGCTTCTTCCTGGGGGTTCTTGTAGCATCTCTGACTCTCCTCTTGATTGGTCGGTGTCAGCAGAGACGGCAACAGAGGGAACTTCTGGCTAGAGATAAGGTGGGCTTAGACCTAGGGGCCCTACCGTCTGGGACCACAAGCTACAGCCAAGACCCTCCCTCCCCTTCTCCTGAAGATGAGCGGTTGCCTCTGGCCCTGGCCAAGAGGGGTAGTGGCTTTGGTGGCTTCCCTCCACCCTTCCTGCTTGATCCTTGCTCGAGCCCGGCCCATATTAGGCTCACCGGGGCTCCACTGGCCACATGTGATGAAACATCCATCTAG

Related Sequences

XP_004844711.1 SequenceType object (4)

Sema4f PREDICTED: semaphorin-4F isoform X1 [Heterocephalus glaber]

Length: 770 aa      View alignments
>XP_004844711.1
MLAWDARPRPGPGPPLALPFPLVLLMVLSGSVSGRVPRSVPRTSLPISEADAYLTRFAVPHTYDYSVLLVDPATQTLYVGARDTIFALSLPFSGERPRRIDWMVPEAHRQNCKKKGKKEDECHNFVQILVIANASHLLTCGTFAFDPKCGVIDVSSFQQVERLESGRGKCPFEPAQRSAAVMAGGILYAATVKNYLGTEPIISRAVGRAEDWIRTETLPAWLNAPAFVEAVALSPAEWGDEDGDDEIYFFFTETSRTFDSYEHIKVPRVARVCAGDLGGRKTLQQRWTTFLKADLLCPGPEHGRASTVLQDMAELRPDLGIGTPVFYGIFSSQWEGAAISAICAFRPQDIRTVLNGSFRELKHDCNRGLPVMDNDVPQPRPGECITKNMKLQQFGSSLSLPDRVLTFIRDHPLMDRPVFPADGHPLLVTTDTAYLRVVAHRVTSLSGKEYDVLYLGTEDGHLHRAVCIGAQLSVLEDLALFPEPQPVENMKLYHGWLLVGSRTEVTQVNTINCGRLLSCSECILAQDPACAWSFQLDSCVAHAGELQGLVQDIESADVSSLCPKEPGEHPVVFEVPVATSAHVVLPCSPSSAWASCVWHQPSGMTALTPRRDGLEVVVSPGAMGAYACECQEGGAARVVAAYSLVWGSHQGPSNRAHTVGAGLIGFFLGVLVASLTLLLIGRCQQRRQQRELLARDKVGLDLGALPSGTTSYSQDPPSPSPEDERLPLALAKRGSGFGGFPPPFLLDPCSSPAHIRLTGAPLATCDETSI