Sequence details NCBI ID: XM_004844645.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Gcfc2
Gene Name GC-rich sequence DNA-binding factor 2, transcript variant X2
Entrez Gene ID 101718296

Database interlinks

Part of NW_004624749.1 (Scaffold)

For more information consult the page for NW_004624749.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

GCFC2 ENSCPOG00000002225 (Guinea pig)

Gene Details

GC-rich sequence DNA-binding factor 2

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000002018, Guinea pig)

Protein Percentage 84.59%
CDS Percentage 89.04%
Ka/Ks Ratio 0.29785 (Ka = 0.0822, Ks = 0.2761)

GCFC2 ENSG00000005436 (Human)

Gene Details

GC-rich sequence DNA-binding factor 2

External Links

Gene Match (Ensembl Protein ID: ENSP00000318690, Human)

Protein Percentage 79.79%
CDS Percentage 86.61%
Ka/Ks Ratio 0.33755 (Ka = 0.1075, Ks = 0.3185)

Gcfc2 ENSMUSG00000035125 (Mouse)

Gene Details

GC-rich sequence DNA binding factor 2

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000035644, Mouse)

Protein Percentage 70.7%
CDS Percentage 79.41%
Ka/Ks Ratio 0.34684 (Ka = 0.1807, Ks = 0.5211)

Gcfc2 ENSRNOG00000006888 (Rat)

Gene Details

GC-rich sequence DNA-binding factor 2 (Gcfc2), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000009104, Rat)

Protein Percentage 70.05%
CDS Percentage 77.93%
Ka/Ks Ratio 0.3271 (Ka = 0.1934, Ks = 0.5912)

Genome Location

Sequence Coding sequence

Length: 2319 bp    Location: 27667009..27696653   Strand: +
Raw sequence   
>XM_004844645.1
ATGGCTCACAGGCCCCAGAGAACCTTCCGGCGGCGCAAAGTGGACTCTAGCGATAGCGATGGCGACCAGGATCCGTCAGCTGAGCCTGAGGCCCAGACCGAGCAGGGGTCCCCGGGCTCGCCGGAGGAAGGTCCGCTCCCCGGAGTCCGCTCTGAGGTGGCGGGGCCGCAGCGCCGGGCCCGGGTCCCTCGGGGCCGGGGTCGAGTCTGGGCGAGCTCCCGACGCACGGACGGCGGCTCGGAATCCAGAAGAGTTGATCTATCAACAGATGAAGAAGATGGAACACACCACTCCTCAGAGAGTAAAGATGATCAGAGTTCATCCTCTGACAGCTCTAGCTCTCTGGAAGAAAGAAAATTTTCATCAGTAGTTAAAATCCCCGATGCAGCTTTTATTCAGACAGCCCGTAGAAAACGTGAATTGGCCAGGGTCCAAGATGACTATATTCCTTTGGATCTAAAACATCCCTCCACCAGCTCTGCTATGAAAAGAAGCAGTGATGAGGATCCTGAGAGTGAGCCCGATGACCACGATAAAAGAATACTATTTACCCCAAAGCCCCAAACACTTAGACAAAGAATAGCTGAAGAAATAGCAAGCAGAAATGAAGAAACAAGTGAAAAGAGCCAGGAAGATGAAAATCAGGATATTTGGGAACAGCAGCAAATGACAAAAGCAGTAAAAATCACAGAGGGAAGAGACATAGACCTTTCCTACAGCAGTGATTCTCTAACAGTGAAGAAGTTTGCTATTTCCATTTCATTTCCGCCAGTAAATTTAGAAATTATAAAGAAGCAATTACACACCAGATTAACATTGCTACAGAATACTCATCGCTCACACCAGAGAGAATATGAAAGATATGTAGAAGATATCAAGAGCTCAAAGAGTACAATCCAGAATCTAGAGAGTTCATCAAATCAAGCTCTAAATTATAAGTTCTATAAAAGCATGAAAATATATGTGGAAAATTTAATTGACTGTCTAAATGAAAAGATTATCCACATCCAAGAAATAGAATCATCCATGCATGCACTCCTTTTAAAACAAGCTATGACCTTAATGAAACGCAGGCAAGATGAATTAAAACATGAATCAACGTATTTACAGCAGTTATCACGCAAAGCTGAGACATCAACAAATGGAAGCTTGACTGTAGATGAAAATACTCAAAGAATTTTAGAAGAGGTGGAATCTCGAAGGTCAAAAAGAAGACAAGCAAGGACATTTACTGGGAATTGTAACCATCAGGAGGGGACATCGAGTGATGATGAACTGCCTTCCACAGAGATGACTGACTTCCAGAAAAACCAAGGTGACATTTTACAGGATCATGAGCAAGTTTTTGAAGATGTGGATGATGATTTTTGTAAAATCCAGAATATTTTACTGAAATTTCAGGAATGGCGAGAAAAGTTTCCTGATTCCTACTATGACGCTTTCATTGGTTTATGCATACCAAAGCTTTTAAATCCTCTAATACGAGTTCAGTTGATTGATTGGAATCCACTTAAGTTGGGCTCCACAGGTGTAAAACAAATGTCATGGTTCACGTCTATAGAAGAATTTATTGATAGTAGTGTAGAAGATACAAAGAAGGACAATAATCCTGATAAAAAAATTTTGTCTACTGTCATCAACAAAACAATTATTCCTAGACTTACAGACTTCATAGAATTCATTTGGGATCCTTTGTCAACCTCACAGACAACAAGTTTAATAACACACTGCAGAGTGATTCTTGAAGAACATTCCACTTGGAAAAATGAAGTTAGTAAAAGCAAACAGGATTTACTTAAATCCATTGTTTCAAGCATGAAGAAGGCAATAGAAGATGATGTTTTTATACCTCTGTATCCAAAGAGCACTATAGAAGATAAAACATCAGCATATTCAAAGTTCCAAGAGAGACAGTTCTGGTCGGCTCTAAAGCTCTTCTGCAATATTCTTCTTTGGAATGGACTCCTCCCAGATGACACATTGAAAGAGTTAGGACTAGGGAAGCTGCTAAATCGCTACCTTATTATAGCTCTACTTCATGCCATTCCTGGGCCAGATGTTGTTAAAAAGTGCAGCCAGATAGCAGCATGTCTGCCTGAAAAGTGGTTTGAAAATCCTGCTATGAGGACATCTATTCCCCAGATGGAACACTTCATTCAGTTTTTATTACAATCTGCACATAACTTTTCTAGAAGTGAATTCAGCAATGAAGTCAAGGAAATAATTCTTATTCTCATGAAAATAAAAGCTTTGAATCAAGCAGAATCCCTCATAGAAGAAGATCACCTAGATCTTAAATCGCTAATTAAAGAAGTTTGA

Related Sequences

XP_004844702.1 Protein

Gcfc2 PREDICTED: GC-rich sequence DNA-binding factor 2 isoform X2 [Heterocephalus glaber]

Length: 772 aa      View alignments
>XP_004844702.1
MAHRPQRTFRRRKVDSSDSDGDQDPSAEPEAQTEQGSPGSPEEGPLPGVRSEVAGPQRRARVPRGRGRVWASSRRTDGGSESRRVDLSTDEEDGTHHSSESKDDQSSSSDSSSSLEERKFSSVVKIPDAAFIQTARRKRELARVQDDYIPLDLKHPSTSSAMKRSSDEDPESEPDDHDKRILFTPKPQTLRQRIAEEIASRNEETSEKSQEDENQDIWEQQQMTKAVKITEGRDIDLSYSSDSLTVKKFAISISFPPVNLEIIKKQLHTRLTLLQNTHRSHQREYERYVEDIKSSKSTIQNLESSSNQALNYKFYKSMKIYVENLIDCLNEKIIHIQEIESSMHALLLKQAMTLMKRRQDELKHESTYLQQLSRKAETSTNGSLTVDENTQRILEEVESRRSKRRQARTFTGNCNHQEGTSSDDELPSTEMTDFQKNQGDILQDHEQVFEDVDDDFCKIQNILLKFQEWREKFPDSYYDAFIGLCIPKLLNPLIRVQLIDWNPLKLGSTGVKQMSWFTSIEEFIDSSVEDTKKDNNPDKKILSTVINKTIIPRLTDFIEFIWDPLSTSQTTSLITHCRVILEEHSTWKNEVSKSKQDLLKSIVSSMKKAIEDDVFIPLYPKSTIEDKTSAYSKFQERQFWSALKLFCNILLWNGLLPDDTLKELGLGKLLNRYLIIALLHAIPGPDVVKKCSQIAACLPEKWFENPAMRTSIPQMEHFIQFLLQSAHNFSRSEFSNEVKEIILILMKIKALNQAESLIEEDHLDLKSLIKEV