Details from NCBI annotation

Gene Symbol Lrrtm1
Gene Name leucine rich repeat transmembrane neuronal 1, transcript variant X3
Entrez Gene ID 101713562

Database interlinks

Part of NW_004624749.1 (Scaffold)

For more information consult the page for NW_004624749.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

LRRTM1 ENSCPOG00000001371 (Guinea pig)

Gene Details

leucine rich repeat transmembrane neuronal 1

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000017450, Guinea pig)

Protein Percentage 98.08%
CDS Percentage 96.36%
Ka/Ks Ratio 0.03645 (Ka = 0.0078, Ks = 0.2148)

LRRTM1 ENSG00000162951 (Human)

Gene Details

leucine rich repeat transmembrane neuronal 1

External Links

Gene Match (Ensembl Protein ID: ENSP00000295057, Human)

Protein Percentage 97.89%
CDS Percentage 95.79%
Ka/Ks Ratio 0.03624 (Ka = 0.0093, Ks = 0.2574)

Lrrtm1 ENSMUSG00000060780 (Mouse)

Gene Details

leucine rich repeat transmembrane neuronal 1

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000125207, Mouse)

Protein Percentage 96.35%
CDS Percentage 91.23%
Ka/Ks Ratio 0.03369 (Ka = 0.0189, Ks = 0.5596)

LRRTM1 ENSRNOG00000006093 (Rat)

Gene Details

leucine rich repeat transmembrane neuronal 1 (LRRTM1), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000007993, Rat)

Protein Percentage 96.17%
CDS Percentage 91.25%
Ka/Ks Ratio 0.03185 (Ka = 0.0179, Ks = 0.5635)

Genome Location

Sequence Coding sequence

Length: 1569 bp    Location: 22695213..22698604   Strand: +
>XM_004844633.1
ATGGATTTCCTGCTGCTCGGTCTCTGTCTATACTGGCTGCTGAAGAGGCCCTCGGGGGTGGTCTTGTGTCTGCTGGGGGCCTGCTTTCAGATGCTGCCCGCCGCCCCCAGTGGGTGCCCGCAGCTGTGCCGGTGCGAGGGGCGGCTGCTGTACTGTGAGGCGCTCAACCTCACCGAGGCGCCCCACAACCTGTCCGGCCTGCTGGGCTTGTCCCTGCGCTACAACAGCCTCTCGGAGCTGCGCGCCGGCCAGTTCACGGGGTTAATGCAGCTCACGTGGCTCTATTTGGATCACAATCACATCTGCTCCGTGCAGGGGGACGCATTTCAGAAACTGCGCCGAGTTAAGGAACTCACGCTGAGTTCCAACCAGATCACCCAACTGGCCAACACCACCTTCCGGCCCATGCCCAACCTGCGCAGCGTGGACCTCTCCTACAACAAGCTGCAGGCGCTCGCGCCTGACCTCTTCCACGGGCTGCGGAAACTCACCACGCTGCACATGCGGGCCAACGCCATCCAGTTCGTGCCCGTGCGCATCTTCCAGGACTGCCGCAGCCTCAAGTTTCTCGACATAGGATACAATCAGCTCAAGAGTCTGGCGCGCAACTCTTTCGCCGGCTTGTTCAAGCTCACCGAGCTGCACTTGGAGCACAACGACTTGGTCAAGGTGAACTTCGCCCACTTCCCGCGCCTCATCTCCCTGAACTCGCTCTGCCTGAGGAGGAACAAGGTGGCCATTGTGGTCAGCTCGCTGGACTGGGTTTGGAACCTGGAGAAAATGGACCTGTCCGGCAACGAGATCGAGTACATGGAGCCCCATGTGTTTGAGACCGTGCCGCACCTGCAGTCCCTGCAGCTGGACTCCAACCGCCTCACCTACATCGAGCCCCGCATCCTCAACTCCTGGAAGTCGCTTATGAGCATTACTCTGGCTGGGAACCTGTGGGACTGTGGGCGCAACGTGTGTGCCCTGGCGTCCTGGCTCAGCAACTTCCAAGGGCGCTACGACGGCAGCTTGCAGTGCGCCAGCCCTGAGTACGCCCAGGGAGAGGATGTCCTGGACGCCGTGTACGCCTTCCACCTGTGCGAGGATGGGGCCGAGCCGACCAGCGGCCACCTCCTCTCGGCCGTCACCAACCGCAGTGACCTGGGAGCCCCTGACAGCTTGGCCACCACGCTCGAGGACGGCGGGGAGGGACAGCACGACGGCACGCCCGAGCCTGCCACGGTGGCTCTCCCCGGCGGCGAGCACGCAGAGAACGCCGTACAGATACACAAGGTGGTCACCGGCACCATGGCCCTCATCTTCTCCTTCCTCATCGTGGTCCTGGTGCTCTACGTGTCCTGGAAGTGTTTCCCAGCCAGTCTCAGGCAGCTTAGACAGTGCTTTGTCACGCAGCGCAGGAAGCAAAAGCAGAAACAGACCATGCATCAGATGGCTGCCATGTCTGCCCAGGAATACTATGTTGATTACAAACCGAACCACATTGAGGGAGCCCTGGTGATCATCAATGAGTATGGCTCGTGCACCTGCCACCAGCAGCCCGCGAGGGAATGCGAGGTGTGA

Related Sequences

XP_004844690.1 Protein

Lrrtm1 PREDICTED: leucine-rich repeat transmembrane neuronal protein 1 isoform X3 [Heterocephalus glaber]

Length: 522 aa      View alignments
>XP_004844690.1
MDFLLLGLCLYWLLKRPSGVVLCLLGACFQMLPAAPSGCPQLCRCEGRLLYCEALNLTEAPHNLSGLLGLSLRYNSLSELRAGQFTGLMQLTWLYLDHNHICSVQGDAFQKLRRVKELTLSSNQITQLANTTFRPMPNLRSVDLSYNKLQALAPDLFHGLRKLTTLHMRANAIQFVPVRIFQDCRSLKFLDIGYNQLKSLARNSFAGLFKLTELHLEHNDLVKVNFAHFPRLISLNSLCLRRNKVAIVVSSLDWVWNLEKMDLSGNEIEYMEPHVFETVPHLQSLQLDSNRLTYIEPRILNSWKSLMSITLAGNLWDCGRNVCALASWLSNFQGRYDGSLQCASPEYAQGEDVLDAVYAFHLCEDGAEPTSGHLLSAVTNRSDLGAPDSLATTLEDGGEGQHDGTPEPATVALPGGEHAENAVQIHKVVTGTMALIFSFLIVVLVLYVSWKCFPASLRQLRQCFVTQRRKQKQKQTMHQMAAMSAQEYYVDYKPNHIEGALVIINEYGSCTCHQQPARECEV