Details from NCBI annotation

Gene Symbol Smyd1
Gene Name SET and MYND domain containing 1, transcript variant X1
Entrez Gene ID 101718535

Database interlinks

Part of NW_004624749.1 (Scaffold)

For more information consult the page for NW_004624749.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

SMYD1 ENSCPOG00000011088 (Guinea pig)

Gene Details

SET and MYND domain containing 1

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000009969, Guinea pig)

Protein Percentage 97.96%
CDS Percentage 93.88%
Ka/Ks Ratio 0.02674 (Ka = 0.0089, Ks = 0.3332)

SMYD1 ENSG00000115593 (Human)

Gene Details

SET and MYND domain containing 1

External Links

Gene Match (Ensembl Protein ID: ENSP00000393453, Human)

Protein Percentage 96.94%
CDS Percentage 91.9%
Ka/Ks Ratio 0.02968 (Ka = 0.0142, Ks = 0.4785)

Smyd1 ENSMUSG00000055027 (Mouse)

Gene Details

SET and MYND domain containing 1

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000073911, Mouse)

Protein Percentage 95.92%
CDS Percentage 90.41%
Ka/Ks Ratio 0.02873 (Ka = 0.0182, Ks = 0.6343)

Smyd1 ENSRNOG00000006776 (Rat)

Gene Details

SET and MYND domain containing 1 (Smyd1), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000009184, Rat)

Protein Percentage 96.12%
CDS Percentage 90.41%
Ka/Ks Ratio 0.03024 (Ka = 0.0178, Ks = 0.5901)

Genome Location

Sequence Coding sequence

Length: 1473 bp    Location: 16432887..16400048   Strand: -
>XM_004844563.1
ATGACGATAGGGAGCATGGAGAACGTGGAGGTCTTCACTTCCGAGGGCAAAGGCAGAGGTCTGAAGGCCACAAAGGAGTTCTGGGCTGCAGATGTCATCTTTGCCGAGCGGGCTTATTCCGCAGTGGTTTTTGACAGCCTGGTGAACTTTGTGTGCCACACCTGCTTCAAGAGGCAGGAGAAGCTCCATCGCTGCGGGCAGTGCAAGTTCGCCCACTACTGTGACCGCACCTGCCAGAAGGACGCCTGGCTGAACCACAAGAATGAGTGTTCTGCCATCAAGAGATATGGGAAGGTGCCCAATGAGAACATCAGGCTGGCAGCACGAATCATGTGGCGGGTGGAGAGAGAGGGCACCGGGCTCACAGAAGGCTGTCTGGTGTCCGTGGATGACCTGCAGAACCATGTGGAGCACTTTGGGGAAGAAGAGCAGAAGGAGCTACGAGTGGACGTGGACATGTTCTTGCAGTACTGGCCACCCCAGAGCCAACAGTTCAGCATGCAGTACATCTCGCACATCTTTGGAGTGATCAACTGCAATGGCTTCACACTCAGTGACCAGAGAGGCCTGCAGGCGGTGGGAGTGGGCATCTTTCCCAACCTGGGCCTGGTGAACCATGACTGTTGGCCTAACTGCACAGTCATATTCAACAATGGCAATCATGAGGCAGTGAAATCCATGTTTCACACCCAGATGAGGATTGAGCTCCGGGCCCTGGGTAAGATCTCAGAAGGAGAGGAGCTCACAGTGTCCTACATTGACTTCCTCAATGTCAGTGAAGAACGCAAGAGGCAGCTGAAGAAGCAGTACTACTTTGACTGCACATGTGAGCACTGCCAGAAAAGGCTGAAGGATGACCTCTTCCTGGGGGTGAAAGAGGACCCCAAGCCCTCTCAAGAAGTGGTGAAGGAGATGATACAATTCTCGAAGGACACCCTGGAAAAAATAGACAAGGCTCGATCTGAGGGTTTGTATCATGAGGTTGTAAAGCTCTGCCGGGAGTGCCTGGAGAAGCAGGAGCCGGTGTTTGCCGACACCAACCTGTACACGCTTCGGATGCTGAGTGTGGTTTCTGAGGTCCTCTCCTACCTCCAGGCCTTTGAGGAGGCCGCACACTATGCCAGAAGGATGGTGGATGGCTACATGAAGCTCTATCACCCCAACAATGCCCAGCTGGGCATGGCTGTGATGCGGGCAGGGCTGACCAACTGGCACGCTGGTAACATTGAGGTGGGGCATGGGATGATCTGCAAAGCCTATGCCATTCTCCTGGTGACACACGGACCCTCCCACCCCATCACCAAGGACTTAGAGGCCATGCGGGTACAGACAGAGATGGAGCTGCGCATGTTCCGCCAGAATGAATTCATGTACCACAAGATGCGCGAGGCCGCCCTCAACAATCAGCCCATGCAGGTCATGGCAGAGCCGAGCAATGAGCCAGCCCCAGCTCTGTTCCATAAGAAGCAGTGA

Related Sequences

XP_004844620.1 Protein

Smyd1 PREDICTED: histone-lysine N-methyltransferase SMYD1 isoform X1 [Heterocephalus glaber]

Length: 490 aa      View alignments
>XP_004844620.1
MTIGSMENVEVFTSEGKGRGLKATKEFWAADVIFAERAYSAVVFDSLVNFVCHTCFKRQEKLHRCGQCKFAHYCDRTCQKDAWLNHKNECSAIKRYGKVPNENIRLAARIMWRVEREGTGLTEGCLVSVDDLQNHVEHFGEEEQKELRVDVDMFLQYWPPQSQQFSMQYISHIFGVINCNGFTLSDQRGLQAVGVGIFPNLGLVNHDCWPNCTVIFNNGNHEAVKSMFHTQMRIELRALGKISEGEELTVSYIDFLNVSEERKRQLKKQYYFDCTCEHCQKRLKDDLFLGVKEDPKPSQEVVKEMIQFSKDTLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYTLRMLSVVSEVLSYLQAFEEAAHYARRMVDGYMKLYHPNNAQLGMAVMRAGLTNWHAGNIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRVQTEMELRMFRQNEFMYHKMREAALNNQPMQVMAEPSNEPAPALFHKKQ