Details from NCBI annotation

Gene Symbol Lims1
Gene Name LIM and senescent cell antigen-like domains 1, transcript variant X3
Entrez Gene ID 101696476

Database interlinks

Part of NW_004624749.1 (Scaffold)

For more information consult the page for NW_004624749.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

LIMS1 ENSCPOG00000007962 (Guinea pig)

Gene Details

LIM and senescent cell antigen-like domains 1

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000007166, Guinea pig)

Protein Percentage 95.84%
CDS Percentage 91.34%
Ka/Ks Ratio 0.04331 (Ka = 0.0186, Ks = 0.4293)

Lims1 ENSMUSG00000019920 (Mouse)

Gene Details

LIM and senescent cell antigen-like domains 1

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000020077, Mouse)

Protein Percentage 90.13%
CDS Percentage 82.86%
Ka/Ks Ratio 0.06438 (Ka = 0.063, Ks = 0.9782)

Lims1 ENSRNOG00000037765 (Rat)

Gene Details

LIM and senescent cell antigen-like domains 1 (Lims1), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000062647, Rat)

Protein Percentage 94.75%
CDS Percentage 86.1%
Ka/Ks Ratio 0.02833 (Ka = 0.0279, Ks = 0.9839)

Genome Location

Sequence Coding sequence

Length: 1272 bp    Location: 11797612..11843933   Strand: +
>XM_004844509.1
ATGACCGCCCTGCAGCTCAAAGAGCTCTCCCACTCAGGGCTGTACCGCAGGAGGCGTGACCGGCCGGACAGTGTGAGGCTGCCTTGGGCAGGGCTCAGGCTCTCCAACACCCAGATGGCTCTCCCTGAGCGAGCACACCCCAGCACCATCCCCGAAAATGAGGAGGCCCCTTGGACAGTCCCTGATGACGTCCACCAGGCTGACGGAGATGACAGAGCTGTGTCCAGACTACAGCGAAGGCACAGTGACGTCAAAGTCTACAAGGAATTTTGTGACTTTTACGCAAAATTCAACATGGCCAATGCCCTGGCCAGCGCCACCTGTGAGCGCTGCAGAGGGGGCTTTGCACCTGCTGAAAAGATTGTGAATAGCAACGGCGAGCTGTACCATGAACCCTGCTTCGTGTGTGCCCAGTGCTTCCAGCCCTTCCCTGAAGGGCTTTTCTACGAGTTTGAAGGCAGGAAGTATTGTGAACATGACTTCCAGATGCTCTTTGCTCCTTGTTGCCACCAGTGTGGTGAATTCATCATTGGCCGTGTCATCAAAGCCATGAACAACAGCTGGCATCCTGAGTGCTTCTGCTGTGATCTCTGCCAGGAGGTACTGGCAGACATCGGCTTCGTGAAGAATGCTGGCAGACACTTGTGTCGCCCCTGTCATAATCGAGAGAAAGCCCGAGGCCTGGGGAAGTACATCTGCCAGAAGTGCCATGCCATCATCGATGAACAGCCCCTGGTCTTCAAGAACGACCCCTACCATCCCGACCACTTCAACTGTGCCAACTGCGGGAAGGAGCTGACTGCCGATGCCAGGGAGCTGAAGGGGGAGCTCTACTGCCTGCCATGCCATGACAAGATGGGAGTGCCCATCTGTGGGGCCTGCCGCCGGCCCATTGAGGGCCGTGTGGTGAATGCTATGGGCAAGCAGTGGCATGTAGAGCATTTTGTTTGTGCCAAGTGTGAGAAGCCTTTTCTTGGACATCGCCATTATGAGAGGAAGGGCCTGGCATACTGTGAGACTCACTATAACCAGCTGTTTGGAGATGTTTGTTTCCACTGCAACCGTGTCATAGAAGGCGATGTGGTCTCTGCCCTTAACAAGGCCTGGTGCGTGAACTGCTTCGCCTGCTCCACCTGCCACACCAAGCTGACACTCAAGAATAAATTTGTGGAGTTTGACATGAAGCCCGTCTGTAAGAAGTGCTATGAGAAATTTCCATTGGAGCTAAAGAAAAGACTGAAGAAATTAGCTGAGACCTTAGGAAGGAAATAA

Related Sequences

XP_004844566.1 Protein

Lims1 PREDICTED: LIM and senescent cell antigen-like-containing domain protein 1 isoform X3 [Heterocephalus glaber]

Length: 423 aa      View alignments
>XP_004844566.1
MTALQLKELSHSGLYRRRRDRPDSVRLPWAGLRLSNTQMALPERAHPSTIPENEEAPWTVPDDVHQADGDDRAVSRLQRRHSDVKVYKEFCDFYAKFNMANALASATCERCRGGFAPAEKIVNSNGELYHEPCFVCAQCFQPFPEGLFYEFEGRKYCEHDFQMLFAPCCHQCGEFIIGRVIKAMNNSWHPECFCCDLCQEVLADIGFVKNAGRHLCRPCHNREKARGLGKYICQKCHAIIDEQPLVFKNDPYHPDHFNCANCGKELTADARELKGELYCLPCHDKMGVPICGACRRPIEGRVVNAMGKQWHVEHFVCAKCEKPFLGHRHYERKGLAYCETHYNQLFGDVCFHCNRVIEGDVVSALNKAWCVNCFACSTCHTKLTLKNKFVEFDMKPVCKKCYEKFPLELKKRLKKLAETLGRK