Sequence details NCBI ID: XM_004844388.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Sema4c
Gene Name sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4C, transcript variant X5
Entrez Gene ID 101713072

Database interlinks

Part of NW_004624749.1 (Scaffold)

For more information consult the page for NW_004624749.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

SEMA4C ENSCPOG00000014020 (Guinea pig)

Gene Details

sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4C

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000012628, Guinea pig)

Protein Percentage 96.39%
CDS Percentage 90.57%
Ka/Ks Ratio 0.03906 (Ka = 0.0178, Ks = 0.4555)

SEMA4C ENSG00000168758 (Human)

Gene Details

sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4C

External Links

Gene Match (Ensembl Protein ID: ENSP00000306844, Human)

Protein Percentage 90.13%
CDS Percentage 86.88%
Ka/Ks Ratio 0.07801 (Ka = 0.0482, Ks = 0.6177)

Sema4c ENSMUSG00000026121 (Mouse)

Gene Details

sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4C

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000110641, Mouse)

Protein Percentage 88.69%
CDS Percentage 83.96%
Ka/Ks Ratio 0.07871 (Ka = 0.0594, Ks = 0.7542)

Sema4c ENSRNOG00000016254 (Rat)

Gene Details

sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4C (Sema4c), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000021956, Rat)

Protein Percentage 89.17%
CDS Percentage 84.72%
Ka/Ks Ratio 0.08342 (Ka = 0.0566, Ks = 0.6782)

Genome Location

Sequence Coding sequence

Length: 2565 bp    Location: 2745978..2737251   Strand: -
Raw sequence   
>XM_004844388.1
ATGTTTGCTGACCACTTCTTTTCCCTTGCCAGGGCTGCTGGCCTGGAGCTGAGAGCTGGGGTGTGTGCCATGGCCCCATATTGGGCTGTCTGGCTGCTGGCAGCAGGGCTGTGTGGCCTGGGCATTGGGGCTGAGGTGTGGTGGAACCTTGTGCCCCGAAAAACAGTATCTTCTGGGGAACTGGCAACAGTGGTGCAGCGGTTCTCCCAGACCGGCATCCAGGACTTCTTGACCTTGACCCTGACTGAGCAGTCTGGGCTGCTGTACGTGGGGGCGCGCGAGGCCCTGTTCGCCTTCAGCGTGGAGGCTCTGGAACTGCAGGGAGTGATCTCCTGGGAGGCACCAGCTGAGAAGAAGACTGAGTGCATCCAGAAGGGAAAGAGCAACCAGACGGAGTGCTTTAACTTTATCCGCTTCCTGCAGCCATACAATGCCTCACACCTGTACGTGTGTGGGACCTACGCCTTCCAGCCCAAGTGCACCTACATCGACATGTTCACTTTCACTTTGGAACGAGGAGACTTTGAGGATGGGAAGGGAAAGTGTCCCTATGACCCAGCTAAGGGCCACACTGGCCTCCTTGTGGATGGAGAGCTGTACTCGGCCACACTAAACAACTTCCTGGGCACAGAGCCTGTCATCCTGAGGAACATGGGCCCCCACCATGCCATAAAGACTGAGTACCTAGCCTTTTGGCTCAATGAACCCCACTTTGTAGGCTCTGCCTACGTCCCTGAGAGCGTGGGGAGCTTCACTGGGGATGACGACAAGATCTACTTCTTCTTCAGCGAGCGGGCTGTGGAGTATGACTGCTATGCGGAGCAAGTGGTAGCTCGAGTCGCCCGAGTCTGTAAGGGAGACATGGGAGGGGCACGGACGCTGCAGAGGAAGTGGACCACATTCCTGAAGGCGAGGCTGGTGTGCTCGGCCCCTAACTGGCAGCTGTACTTCAACCACCTGCGGGCAGTACACACCCTGCGAGGCGCCTCCTGGCACAACACTACCTTTTTCGGGGTCTTCCGAGCGCGATGGGGCGATGTAGACCTATCAGCAGTCTGTGAGTACCAGCTGGAGGAGATCCAGCGGGTGTTCGAGGGTCCCTACAAGGAGTACCGAGAGCAAGCCCAGAAGTGGGCCCGCTATACGGACCCAGTACCCACCCCTCGGCCCGGCTCATGCATCAACAACTGGCACCGGCGCCACGGCTACTCCAGCTCCCTAGAGCTGCCTGACAACACCCTCAACTTCATCAAGAAGCACCCGCTGATGGAGGAGCAGGTGGCACCCCGGTGGGGCCGGCCCCTGCTGGTGAAGAAGGATGCCAACTTCACCCACCTAGTAGTCGACCAGATCATGGGGCTCGATGAAGCCACCTACACAGTGCTGTTCATTGGCACAGGGGATGGCTGGCTGCTCAAGGCTGTGAGCCTGGGGGCCTGGGTGCACCTGATTGAGGAGCTGCAGGTGTTTGACCGGGAGCCCGTGGAGAGCCTGGTGCTGTCTCAGAGCAAGAAGCTGCTTTTTGCCGGCTCCCGCTCTCAGCTGGTTCAGGTGCCCCTGGCAGCCTGTAGCAAGTACCGCTCCTGTGCAGACTGTGTGCTTGCCCGGGACCCCTACTGCGCCTGGAATGTCAACACCAGCCTCTGTGTGGCCACAGGTGGCCATTCCGGATCCCTGCTGGTCCAGCATGTGACCATCTTGGACACATCGAGCATCTGCAACCTTCGTGGCAGTAAGAAAGCCAGGCTCACTCCCAAAAACATCACGGTGGTAGCTGGTACAGACCTGGTGCTACCCTGCCGCCTCTCCTCCAACCTGGCCCGTGCCCGCTGGACCTTCAGGGATCGGGATCTACCTGCAGAACAGCCTGGTTCTTTCCTTTACGATACCCGGCTGCAGGCCCTGGTGGTAATGGCTGCCCAGCCCCGTCATGCGGGCACCTACCACTGCTTTTCGGAGGAGCAGGGGGCACGGCTGGCTGCAGAAGGCTACCTTGTGGCTGTTGTGGCGGGCCCATCAGTGACCTTGGAGGCCAGGGCGCCCTTGGAAAACCTGGGGCTGGTATGGCTAGCTGTGGTGGCCCTGGGGGCCGTGTGCCTGGTATTGCTGCTGCTGGTTCTGTCACTACGCCGGCGGCTGCGGGAAGAGCTGGAAAAAGGTGCCAAGGCAGCCGAGAGGACTCTGGTGTACCCCCTGGAGCTGCCCAAGGAATCCACCAGTGCCCCCTTCCGGCCTGGCCCGGAAACGGATGAGAAACTTTGGGATCCTGTTGGCTACTACTACTCGGATGGCTCACTGAAGATTGTTCCTGGACATGCAAGGTGCCAGCCTGGGGTCGGGCCCCCCTCCCCCCCTCCCGGCATCCCTGGCCAACCCTTGCCTTCTCCAACTCGGCTCCACCTGGGGGGCGGACGGAACTCGAATGCCAACGGTTATGTGCGCTTACAGTTAGGAGGAGAGGACCGGGGCGGGCACCCCCTGCCTGAGCTCGCTGATGAACTGAGACGCAAGCTGCAGCAGCGCCAGACCCTGCCCGACTCTAACCCGGAGGAGTCTTCGGTGTGA

Related Sequences

XP_004844445.1 Protein

Sema4c PREDICTED: semaphorin-4C isoform X5 [Heterocephalus glaber]

Length: 854 aa      View alignments
>XP_004844445.1
MFADHFFSLARAAGLELRAGVCAMAPYWAVWLLAAGLCGLGIGAEVWWNLVPRKTVSSGELATVVQRFSQTGIQDFLTLTLTEQSGLLYVGAREALFAFSVEALELQGVISWEAPAEKKTECIQKGKSNQTECFNFIRFLQPYNASHLYVCGTYAFQPKCTYIDMFTFTLERGDFEDGKGKCPYDPAKGHTGLLVDGELYSATLNNFLGTEPVILRNMGPHHAIKTEYLAFWLNEPHFVGSAYVPESVGSFTGDDDKIYFFFSERAVEYDCYAEQVVARVARVCKGDMGGARTLQRKWTTFLKARLVCSAPNWQLYFNHLRAVHTLRGASWHNTTFFGVFRARWGDVDLSAVCEYQLEEIQRVFEGPYKEYREQAQKWARYTDPVPTPRPGSCINNWHRRHGYSSSLELPDNTLNFIKKHPLMEEQVAPRWGRPLLVKKDANFTHLVVDQIMGLDEATYTVLFIGTGDGWLLKAVSLGAWVHLIEELQVFDREPVESLVLSQSKKLLFAGSRSQLVQVPLAACSKYRSCADCVLARDPYCAWNVNTSLCVATGGHSGSLLVQHVTILDTSSICNLRGSKKARLTPKNITVVAGTDLVLPCRLSSNLARARWTFRDRDLPAEQPGSFLYDTRLQALVVMAAQPRHAGTYHCFSEEQGARLAAEGYLVAVVAGPSVTLEARAPLENLGLVWLAVVALGAVCLVLLLLVLSLRRRLREELEKGAKAAERTLVYPLELPKESTSAPFRPGPETDEKLWDPVGYYYSDGSLKIVPGHARCQPGVGPPSPPPGIPGQPLPSPTRLHLGGGRNSNANGYVRLQLGGEDRGGHPLPELADELRRKLQQRQTLPDSNPEESSV