Sequence detailsNCBI ID: XM_004844388.1 (Coding sequence)  Best Hit

Details from NCBI annotation

Gene Symbol Sema4c
Gene Name sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4C, transcript variant X5
Entrez Gene ID 101713072

Database interlinks

Part of NW_004624749.1 (SequenceType object (1))

For more information consult the page for NW_004624749.1 (SequenceType object (1))

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

SEMA4CENSCPOG00000014020 (Guinea pig)

Gene Details

sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4C

External Links

Gene Match(Ensembl Protein ID:ENSCPOP00000012628, Guinea pig)

Protein Percentage 96.39%
CDS Percentage 90.57%
Ka/Ks Ratio 0.03906 (Ka = 0.0178, Ks = 0.4555)

SEMA4CENSG00000168758 (Human)

Gene Details

sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4C

External Links

Gene Match(Ensembl Protein ID:ENSP00000306844, Human)

Protein Percentage 90.13%
CDS Percentage 86.88%
Ka/Ks Ratio 0.07801 (Ka = 0.0482, Ks = 0.6177)

Sema4cENSMUSG00000026121 (Mouse)

Gene Details

sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4C

External Links

Gene Match(Ensembl Protein ID:ENSMUSP00000110641, Mouse)

Protein Percentage 88.69%
CDS Percentage 83.96%
Ka/Ks Ratio 0.07871 (Ka = 0.0594, Ks = 0.7542)

Sema4cENSRNOG00000016254 (Rat)

Gene Details

sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4C (Sema4c), mRNA

External Links

Gene Match(Ensembl Protein ID:ENSRNOP00000021956, Rat)

Protein Percentage 89.17%
CDS Percentage 84.72%
Ka/Ks Ratio 0.08342 (Ka = 0.0566, Ks = 0.6782)

Genome Location

Sequence SequenceType object (2)

Length: 2565 bp    Location: 2745978..2737251   Strand: -
Raw sequence   
>XM_004844388.1
ATGTTTGCTGACCACTTCTTTTCCCTTGCCAGGGCTGCTGGCCTGGAGCTGAGAGCTGGGGTGTGTGCCATGGCCCCATATTGGGCTGTCTGGCTGCTGGCAGCAGGGCTGTGTGGCCTGGGCATTGGGGCTGAGGTGTGGTGGAACCTTGTGCCCCGAAAAACAGTATCTTCTGGGGAACTGGCAACAGTGGTGCAGCGGTTCTCCCAGACCGGCATCCAGGACTTCTTGACCTTGACCCTGACTGAGCAGTCTGGGCTGCTGTACGTGGGGGCGCGCGAGGCCCTGTTCGCCTTCAGCGTGGAGGCTCTGGAACTGCAGGGAGTGATCTCCTGGGAGGCACCAGCTGAGAAGAAGACTGAGTGCATCCAGAAGGGAAAGAGCAACCAGACGGAGTGCTTTAACTTTATCCGCTTCCTGCAGCCATACAATGCCTCACACCTGTACGTGTGTGGGACCTACGCCTTCCAGCCCAAGTGCACCTACATCGACATGTTCACTTTCACTTTGGAACGAGGAGACTTTGAGGATGGGAAGGGAAAGTGTCCCTATGACCCAGCTAAGGGCCACACTGGCCTCCTTGTGGATGGAGAGCTGTACTCGGCCACACTAAACAACTTCCTGGGCACAGAGCCTGTCATCCTGAGGAACATGGGCCCCCACCATGCCATAAAGACTGAGTACCTAGCCTTTTGGCTCAATGAACCCCACTTTGTAGGCTCTGCCTACGTCCCTGAGAGCGTGGGGAGCTTCACTGGGGATGACGACAAGATCTACTTCTTCTTCAGCGAGCGGGCTGTGGAGTATGACTGCTATGCGGAGCAAGTGGTAGCTCGAGTCGCCCGAGTCTGTAAGGGAGACATGGGAGGGGCACGGACGCTGCAGAGGAAGTGGACCACATTCCTGAAGGCGAGGCTGGTGTGCTCGGCCCCTAACTGGCAGCTGTACTTCAACCACCTGCGGGCAGTACACACCCTGCGAGGCGCCTCCTGGCACAACACTACCTTTTTCGGGGTCTTCCGAGCGCGATGGGGCGATGTAGACCTATCAGCAGTCTGTGAGTACCAGCTGGAGGAGATCCAGCGGGTGTTCGAGGGTCCCTACAAGGAGTACCGAGAGCAAGCCCAGAAGTGGGCCCGCTATACGGACCCAGTACCCACCCCTCGGCCCGGCTCATGCATCAACAACTGGCACCGGCGCCACGGCTACTCCAGCTCCCTAGAGCTGCCTGACAACACCCTCAACTTCATCAAGAAGCACCCGCTGATGGAGGAGCAGGTGGCACCCCGGTGGGGCCGGCCCCTGCTGGTGAAGAAGGATGCCAACTTCACCCACCTAGTAGTCGACCAGATCATGGGGCTCGATGAAGCCACCTACACAGTGCTGTTCATTGGCACAGGGGATGGCTGGCTGCTCAAGGCTGTGAGCCTGGGGGCCTGGGTGCACCTGATTGAGGAGCTGCAGGTGTTTGACCGGGAGCCCGTGGAGAGCCTGGTGCTGTCTCAGAGCAAGAAGCTGCTTTTTGCCGGCTCCCGCTCTCAGCTGGTTCAGGTGCCCCTGGCAGCCTGTAGCAAGTACCGCTCCTGTGCAGACTGTGTGCTTGCCCGGGACCCCTACTGCGCCTGGAATGTCAACACCAGCCTCTGTGTGGCCACAGGTGGCCATTCCGGATCCCTGCTGGTCCAGCATGTGACCATCTTGGACACATCGAGCATCTGCAACCTTCGTGGCAGTAAGAAAGCCAGGCTCACTCCCAAAAACATCACGGTGGTAGCTGGTACAGACCTGGTGCTACCCTGCCGCCTCTCCTCCAACCTGGCCCGTGCCCGCTGGACCTTCAGGGATCGGGATCTACCTGCAGAACAGCCTGGTTCTTTCCTTTACGATACCCGGCTGCAGGCCCTGGTGGTAATGGCTGCCCAGCCCCGTCATGCGGGCACCTACCACTGCTTTTCGGAGGAGCAGGGGGCACGGCTGGCTGCAGAAGGCTACCTTGTGGCTGTTGTGGCGGGCCCATCAGTGACCTTGGAGGCCAGGGCGCCCTTGGAAAACCTGGGGCTGGTATGGCTAGCTGTGGTGGCCCTGGGGGCCGTGTGCCTGGTATTGCTGCTGCTGGTTCTGTCACTACGCCGGCGGCTGCGGGAAGAGCTGGAAAAAGGTGCCAAGGCAGCCGAGAGGACTCTGGTGTACCCCCTGGAGCTGCCCAAGGAATCCACCAGTGCCCCCTTCCGGCCTGGCCCGGAAACGGATGAGAAACTTTGGGATCCTGTTGGCTACTACTACTCGGATGGCTCACTGAAGATTGTTCCTGGACATGCAAGGTGCCAGCCTGGGGTCGGGCCCCCCTCCCCCCCTCCCGGCATCCCTGGCCAACCCTTGCCTTCTCCAACTCGGCTCCACCTGGGGGGCGGACGGAACTCGAATGCCAACGGTTATGTGCGCTTACAGTTAGGAGGAGAGGACCGGGGCGGGCACCCCCTGCCTGAGCTCGCTGATGAACTGAGACGCAAGCTGCAGCAGCGCCAGACCCTGCCCGACTCTAACCCGGAGGAGTCTTCGGTGTGA

Related Sequences

XP_004844445.1 SequenceType object (4)

Sema4c PREDICTED: semaphorin-4C isoform X5 [Heterocephalus glaber]

Length: 854 aa      View alignments
>XP_004844445.1
MFADHFFSLARAAGLELRAGVCAMAPYWAVWLLAAGLCGLGIGAEVWWNLVPRKTVSSGELATVVQRFSQTGIQDFLTLTLTEQSGLLYVGAREALFAFSVEALELQGVISWEAPAEKKTECIQKGKSNQTECFNFIRFLQPYNASHLYVCGTYAFQPKCTYIDMFTFTLERGDFEDGKGKCPYDPAKGHTGLLVDGELYSATLNNFLGTEPVILRNMGPHHAIKTEYLAFWLNEPHFVGSAYVPESVGSFTGDDDKIYFFFSERAVEYDCYAEQVVARVARVCKGDMGGARTLQRKWTTFLKARLVCSAPNWQLYFNHLRAVHTLRGASWHNTTFFGVFRARWGDVDLSAVCEYQLEEIQRVFEGPYKEYREQAQKWARYTDPVPTPRPGSCINNWHRRHGYSSSLELPDNTLNFIKKHPLMEEQVAPRWGRPLLVKKDANFTHLVVDQIMGLDEATYTVLFIGTGDGWLLKAVSLGAWVHLIEELQVFDREPVESLVLSQSKKLLFAGSRSQLVQVPLAACSKYRSCADCVLARDPYCAWNVNTSLCVATGGHSGSLLVQHVTILDTSSICNLRGSKKARLTPKNITVVAGTDLVLPCRLSSNLARARWTFRDRDLPAEQPGSFLYDTRLQALVVMAAQPRHAGTYHCFSEEQGARLAAEGYLVAVVAGPSVTLEARAPLENLGLVWLAVVALGAVCLVLLLLVLSLRRRLREELEKGAKAAERTLVYPLELPKESTSAPFRPGPETDEKLWDPVGYYYSDGSLKIVPGHARCQPGVGPPSPPPGIPGQPLPSPTRLHLGGGRNSNANGYVRLQLGGEDRGGHPLPELADELRRKLQQRQTLPDSNPEESSV