Sequence details NCBI ID: XM_004844229.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Tsc22d1
Gene Name TSC22 domain family, member 1, transcript variant X2
Entrez Gene ID 101719339

Database interlinks

Part of NW_004624748.1 (Scaffold)

For more information consult the page for NW_004624748.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

TSC22D1 ENSCPOG00000000560 (Guinea pig)

Gene Details

TSC22 domain family, member 1

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000000491, Guinea pig)

Protein Percentage 91.98%
CDS Percentage 93.87%
Ka/Ks Ratio 0.31531 (Ka = 0.0412, Ks = 0.1306)

TSC22D1 ENSG00000102804 (Human)

Gene Details

TSC22 domain family, member 1

External Links

Gene Match (Ensembl Protein ID: ENSP00000397435, Human)

Protein Percentage 88.01%
CDS Percentage 91.22%
Ka/Ks Ratio 0.35361 (Ka = 0.0648, Ks = 0.1832)

Tsc22d1 ENSMUSG00000022010 (Mouse)

Gene Details

TSC22 domain family, member 1

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000044517, Mouse)

Protein Percentage 84.4%
CDS Percentage 86.7%
Ka/Ks Ratio 0.26415 (Ka = 0.0886, Ks = 0.3354)

Tsc22d1 ENSRNOG00000001030 (Rat)

Gene Details

TSC22 domain family, member 1 (Tsc22d1), transcript variant 2, mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000055007, Rat)

Protein Percentage 84.32%
CDS Percentage 87.12%
Ka/Ks Ratio 0.29641 (Ka = 0.0903, Ks = 0.3045)

Genome Location

Sequence Coding sequence

Length: 3189 bp    Location: 10420630..10589370   Strand: +
Raw sequence   
>XM_004844229.1
ATGCACCAGCCGCCTGAGTCCAACGCCGCGGCGGCGTCTGCCGCCGCTGCAGACGTTAGTGCTAGGAAGATGGCGCACCCGACTATGTTCCCTCGAAGGGGCAGCGGTAGTGGCAGCGCCTCTGCTCTCAGTGCAGCAGGTACCGGTGTTGGTCCTACTGCCACATCTTCTGAAGATTTTCCGCCTGCGTCTCTGCTCCAGCCAGCGTCTCCTGCAGCATCTTCCACATCCGTACCACAGCCTCCTCCTCCACAAAGCCTGAACCTCCTTTCGCAGGCTCAGCTGCAGGCACAGCCCCTTGCACCAGGCGGAACTCAGATGAAAAAGAAAAGTGGCTTCCAGATAACTAGCGTTACTCCGGCTCAGATCTCTGCCAGTATCAGCTCTAACAACAGTATAGCAGAGGACACTGAGAGCTATGATGATCTGGATGAATCTCACACAGAAGATCTCTCTTCTTCCGAGATCCTTGATGTGTCACTTTCCAGGGCTACTGACTTGGGGGAACCTGAGCGCAGCTCCTCCGAAGAGACTCTGAATAACTTCCAGGAAGCAGAGACGCCTGGGGCAGTTTCTCCCAACCAGCCTCACCTTCCACAACCTCATTTGCCTCACCTTCCACAACAGAATGTTGTGATCAATGGGAATGCTCATCCACACCACCTGCATCATCACCATCATATCCATCATGGGCACCACCTTCACCATGGGCACCACCATCCATCCCATGCTGGTGTGGCCAGTGCATCTGTTCCTGGAGGGCCACCTACAAGCCCAATATCCAGAAAACTTTCTACATCTGGAAGCTCTGAGGGTGTTATGCCAGGGACACCAACTTCTGCTGTATCATTGAGTGGCTCACCTGCATCTGTAATGACTAATATCCGGGCTGCAGGTACTGCAGGCAGTGTAGGTATAAATTCTGGTACTGGCACTAGTACAGTGAATAATGTTAACATTGTTTCTGTGGGTAGTTTCAGTCCTAACGTGGCAAGCAGCATGCTTGGTAATGCTAACATAAGTACAAGCAATATTTCTAGTGCTGCTACTGTAAGTGTTGGGCCTGGAGCTACCAGTAGTGTTAATGTGAATATCTTGAGTGGTATGGGCAATGGTACTGTTTCTTCCTCTGCTGTTAACAGTGTCCCTAATGCAACTACAGGGACAAATGTGGGATTGGTTTCAAGTCAGCAGCAACAACCAACAGTTAACACATCAAGGTTCAGAGTTGTGAAGTTAGATTCTACTTCTGAACCCTTTAAAAAAGGTAGATGGACTTGCACTGAGTTCTATGAAAAAGAAAATGCTGTATCTGCTACAGAAGGTGTGACAAATAAAGTGGTGGAGACTGTAAAACAAAACCCGACAGAAGTGACTTCTGAGAGGGAGAGCACTAGTGGGAGTTCAGTGAGCAGTAGTGTCAGCACACTGAGTCACTACACAGAGAGTGTGGGAAGTGGAGAGATGGGAGTCCCTACTGTGGTACAGCAGCCACCAGCCCTTCAAGGTGTGGTGGCCCTTCAACAAATGGATTTCAGTAGCAGTGGTCCACAGAGTATTTCAGCAGTTAGTATACCACAGAGTGTTTCTCAGTCACAGATGTCACAAGTACATTTACAATCTCAAGAACTAGGCTATAAGCAAAAGCAAGGTCTTCAGCCAGTACCTCTGCAAGCCACTGTCAATGCTGCAACTGGTATCCAGCCATCATCTATAAATGTGGTTGGTGTAACTTCAGCTCTAGGTCAGCAGCCTTCCATTTCCAGTTTGGCTCAAACCCAACTGCCATACTCACAGACAGCTCCTCCAGTGCAAACTCCCCTTCCAGGGGCACCACCCCAGCAGTTACAATATGGACAACAGCAACCAATGGTTTCTACGCAGTTGGCCCCAGGCCATGGTCAATCAGTGACTCAGAATCCTACTTCAGAGTATGTACAACAGCAGTCACTTCTGCAAACAGCAATGTCCTCTGGGCAGTCCAGTTCTGCAGGAGTGGGAACAGGGACAGCAGTGATTCCTGTGGCTCAGCCACGGGGGATCCAGCTGCCAACGCAGTCCACAGCAATTCAAGCACAACCTGCAGGGACATCTGGCCAGCCTGTTGGCCAGGCTCAAACAGCAATGTCTGCTGTACCTATTGGTGGTCAAATTGCAACTATTGGTCAACAAGCAAACATACCTACTGCAGTGCAGCAGTCCTCTACCCAAGCTACACCTTCAGTTATTCAGCAAGGTGCTCCTCCATCTTCACAAGTAGTTCCACCTGCTCAAACTGGGATTATTCATCAGGGAGTTCAAACTAGCACTTCAAGCCTTCCTCCACAATTGGTTATTGCACCCCAGAGTACCTTGTTAACTGTGCCTCCCCAGCCACAAGGAGTAGAACCAGTAGTTCAAGAAGTTGTTTCGAAGCAGTTGCCCACAGTTAGTCCTTTACCTTCTGCTAGTAGTATTCCTGTTACAAACCAGGTTAGTTCAACTGGTCCTTCTGGAATGCCTTCTGCCCCAGCAAACTTGGTTCCACCACAGAATATAGCACAACCCCCTGCCACTCAAAATGGTAATTTGATTCAAAGTGTTAGTCAACCTCCCTTGGTAGCAACTAATATAAATTTGCCATTGACACAACAGTTACCACTAAGTTCTGCTCAGTTCTCTGCACAATCATTAGCTCAGGCAATTGGAAGCCAAATTGAAGATGCCAGGCGCCCAGTGGAGCCGTCCTTAGTTGGCTTACCTCAGACTACCAGTGGTGACAGTGGGGGAATGTCAGCAGTTTCAGATGGGAGTAGCAGCAGCCTAGCAGCCTCTGCTTCTCTTTTCCCGTTGAAGGTGCTACCGCTGACAACACCCTTTGTGGATGGCGAGGATGAGAGCTCTGCTGGTGCAAGTGTGGTAGCTATCGACAACAAAATCGAGCAAGCTATGGATCTGGTGAAGAGCCACTTGATGTATGCGGTTAGAGAGGAGGTGGAGGTCCTTAAAGAGCAAATCAAAGAACTAATAGAGAAAAATTCCCAGCTGGAGCAGGAAAACAATCTGCTGAAGACACTGGCCAGTCCTGAGCAGCTTGCCCAGTTTCAGGCCCAGCTGCAGACTGGCTCCCCTCCTGCCACCACACAGCCACAGGGGAGCACACAGCCCCCTGCCCAGCCAGCATCCCAGGGCTCAGGACCAACTGCGTAG

Related Sequences

XP_004844286.1 Protein

Tsc22d1 PREDICTED: TSC22 domain family protein 1 isoform X2 [Heterocephalus glaber]

Length: 1062 aa      View alignments
>XP_004844286.1
MHQPPESNAAAASAAAADVSARKMAHPTMFPRRGSGSGSASALSAAGTGVGPTATSSEDFPPASLLQPASPAASSTSVPQPPPPQSLNLLSQAQLQAQPLAPGGTQMKKKSGFQITSVTPAQISASISSNNSIAEDTESYDDLDESHTEDLSSSEILDVSLSRATDLGEPERSSSEETLNNFQEAETPGAVSPNQPHLPQPHLPHLPQQNVVINGNAHPHHLHHHHHIHHGHHLHHGHHHPSHAGVASASVPGGPPTSPISRKLSTSGSSEGVMPGTPTSAVSLSGSPASVMTNIRAAGTAGSVGINSGTGTSTVNNVNIVSVGSFSPNVASSMLGNANISTSNISSAATVSVGPGATSSVNVNILSGMGNGTVSSSAVNSVPNATTGTNVGLVSSQQQQPTVNTSRFRVVKLDSTSEPFKKGRWTCTEFYEKENAVSATEGVTNKVVETVKQNPTEVTSERESTSGSSVSSSVSTLSHYTESVGSGEMGVPTVVQQPPALQGVVALQQMDFSSSGPQSISAVSIPQSVSQSQMSQVHLQSQELGYKQKQGLQPVPLQATVNAATGIQPSSINVVGVTSALGQQPSISSLAQTQLPYSQTAPPVQTPLPGAPPQQLQYGQQQPMVSTQLAPGHGQSVTQNPTSEYVQQQSLLQTAMSSGQSSSAGVGTGTAVIPVAQPRGIQLPTQSTAIQAQPAGTSGQPVGQAQTAMSAVPIGGQIATIGQQANIPTAVQQSSTQATPSVIQQGAPPSSQVVPPAQTGIIHQGVQTSTSSLPPQLVIAPQSTLLTVPPQPQGVEPVVQEVVSKQLPTVSPLPSASSIPVTNQVSSTGPSGMPSAPANLVPPQNIAQPPATQNGNLIQSVSQPPLVATNINLPLTQQLPLSSAQFSAQSLAQAIGSQIEDARRPVEPSLVGLPQTTSGDSGGMSAVSDGSSSSLAASASLFPLKVLPLTTPFVDGEDESSAGASVVAIDNKIEQAMDLVKSHLMYAVREEVEVLKEQIKELIEKNSQLEQENNLLKTLASPEQLAQFQAQLQTGSPPATTQPQGSTQPPAQPASQGSGPTA