Sequence details NCBI ID: XM_004844200.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Lrch1
Gene Name leucine-rich repeats and calponin homology (CH) domain containing 1, transcript variant X3
Entrez Gene ID 101709937

Database interlinks

Part of NW_004624748.1 (Scaffold)

For more information consult the page for NW_004624748.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

LRCH1 ENSCPOG00000011077 (Guinea pig)

Gene Details

leucine-rich repeats and calponin homology (CH) domain containing 1

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000009958, Guinea pig)

Protein Percentage 95.46%
CDS Percentage 93.0%
Ka/Ks Ratio 0.09334 (Ka = 0.0217, Ks = 0.2321)

LRCH1 ENSG00000136141 (Human)

Gene Details

leucine-rich repeats and calponin homology (CH) domain containing 1

External Links

Gene Match (Ensembl Protein ID: ENSP00000374447, Human)

Protein Percentage 90.66%
CDS Percentage 89.08%
Ka/Ks Ratio 0.16489 (Ka = 0.0548, Ks = 0.3325)

Lrch1 ENSMUSG00000068015 (Mouse)

Gene Details

leucine-rich repeats and calponin homology (CH) domain containing 1

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000086363, Mouse)

Protein Percentage 87.39%
CDS Percentage 84.56%
Ka/Ks Ratio 0.11767 (Ka = 0.0684, Ks = 0.581)

Lrch1 ENSRNOG00000009412 (Rat)

Gene Details

leucine-rich repeats and calponin homology (CH) domain containing 1 (Lrch1), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000047801, Rat)

Protein Percentage 88.63%
CDS Percentage 85.03%
Ka/Ks Ratio 0.10639 (Ka = 0.0611, Ks = 0.5741)

Genome Location

Sequence Coding sequence

Length: 2097 bp    Location: 8479923..8296040   Strand: -
Raw sequence   
>XM_004844200.1
ATGGCGACGCCGGGAAGCGAACCCCAACCTTTCGTCCCTGCCCTCTCCCTAGCGACTCTGCACCCACATCATCATCCGCACCACCACCACCACCATCACCACCACCACGGAGGGACGGGAGCCAGCGGAGGGGCGGGCGGCGGCGGCGGCGGCGGCGGGGGGGCCTTCAACCTGCCCTTGAACCGGGGTCTGGAGCGCGCGCTGGAGGAAGCGGCCAACTCCGGGGGGCTGAACCTGAGTGCCAGGAAGCTGAAGGAATTTCCCAGGACCGCTGCCCCCGGGCACGACCTTTCGGACACGGTGCAGGCAGATTTGTCTAAAAACAGACTGGTTGAAGTTCCAATGGAATTGTGCCATTTTGTATCACTGGAAATTCTTAATCTGTATCACAATTGTATCAGAGTCATTCCTGAGGCCATTATTAATCTGCAGATGCTGACCTACTTAAACTTGAGTCGAAATCAGCTGTCTGCCCTGCCTGCCTGCCTGTGTGGTCTGCCTCTCAAAGTCTTAATCGCAAGTAACAACAAGCTCGGATCACTACCGGAAGAGATAGGTCAGCTCAAACAGTTAATGGAGTTGGATGTCAGCTGCAATGAGATCACAGCGTTGCCCCAGCAGATAGGCCAGTTAAAGTCTCTCCGAGAACTGAATGTCAGAAGAAATTACCTTAAAGTTTTACCACCAGAATTAGTAGATCTTCCCTTGGTAAAGTTTGACTTTTCCTGCAACAAAGTGCTTGTGATCCCGATATGTTTTAGAGAGATGAAGCAGCTGCAAGTGCTACTGCTTGAGAACAACCCTCTCCAGTCTCCTCCAGCTCAGATTTGCACAAAGGGCAAAGTGCATATATTTAAGTATCTGAGCATACAAGCATGCCAGATCAAGACAGCTGACTCCCTTTATCTCCACACCATGGAGAGGCCACATTTACACCAGCAAGTGGAAGACAGCAAGAAGGATTCTGATTCGGGAGTTGGAAGTGATAATGGAGATAAGCGATTATCTGCCACTGAGCCTTCTGATGAAGATGCTGTCAGCCTCAGTGTGCCAATGTCAAATATCATGGAAGAAGAGCAGATCATCAAGGAGGATGGGTGCCATCGCCTTACCCCACCTGCAGGGGAATTTCATCAGGAATTTCAACCAGAGCCTTCCCTCTTGGGTGCCAACAACAACTCAGGACAAGAAAGAGACCAGTTTGCTGATGGAGCAGATGTTCTCCACTCAGGATTTATGAACTATATTAAGGACAGGGCAGAAGTCTGTGAAGAGCTGTTACGGATAGAGGAGGACGCACACTGGCAGACAGAAGGAATAATAAGTTCATCCAAAGATCAGGACATGGATATAGCAATGATTGAGCAGCTGAGAGAAGCAGTAGATTTGCTGCAAGATCCCAATGGATTAAGCACAGATATTACAGAAAGAAGTGTTTTAAATCTGTATCCTATGGGAGCAGCAGAAGACTTAGAATTACCAGATTCTGCACTAAATGGTCAAATAGAGCTGGAGACATCTCCGGTGTGTGAGGTGCAAAATGACCTAACGTTGGAGAGTAATGGAAGCCAGTATTCTCCAGATGAGATGAGAGAGAACTCGCCCACAGTCTCTCCTACCATTAACAGCACAGCTCCATTTGGCCTGAAGCCTCGATCAGTGTTTCTAAGACCTCAGAGAAATCTGGAATCCATAGACCCACAGTTTACTATTCGGAGAAAAATGGAACAGCTACGAGAAGAAAAAGAACTGGTGGAACAACTCCGTGAGAGCATAGAGATGAGACTGAAGGTCACTCTTCATGAAGACCTGGGAGCCGCACTCATGGATGGTGTTGTGCTCTGCCACCTGGTCAATCACATCCGCCCACGGTCTGTTGCCAGTATCCATGTACCCTCCCCGGCAGTTCCCAAACTTAGCATGGCTAAATGCAGAAGAAATGTGGAAAACTTTTTAGAAGCATGCCGAAAACTAGGAGTACCAGAGGAAAAACTGTGTCTACCCCATCACATCCTTGAAGAAAAAGGCTTGGTCAAAGTGGGCATTACTGTCCAAGCATTACTTGACGTCACTGTCACGAAGACTTTGTTCACATGA

Related Sequences

XP_004844257.1 Protein

Lrch1 PREDICTED: leucine-rich repeat and calponin homology domain-containing protein 1 isoform X3 [Heterocephalus glaber]

Length: 698 aa      View alignments
>XP_004844257.1
MATPGSEPQPFVPALSLATLHPHHHPHHHHHHHHHHGGTGASGGAGGGGGGGGGAFNLPLNRGLERALEEAANSGGLNLSARKLKEFPRTAAPGHDLSDTVQADLSKNRLVEVPMELCHFVSLEILNLYHNCIRVIPEAIINLQMLTYLNLSRNQLSALPACLCGLPLKVLIASNNKLGSLPEEIGQLKQLMELDVSCNEITALPQQIGQLKSLRELNVRRNYLKVLPPELVDLPLVKFDFSCNKVLVIPICFREMKQLQVLLLENNPLQSPPAQICTKGKVHIFKYLSIQACQIKTADSLYLHTMERPHLHQQVEDSKKDSDSGVGSDNGDKRLSATEPSDEDAVSLSVPMSNIMEEEQIIKEDGCHRLTPPAGEFHQEFQPEPSLLGANNNSGQERDQFADGADVLHSGFMNYIKDRAEVCEELLRIEEDAHWQTEGIISSSKDQDMDIAMIEQLREAVDLLQDPNGLSTDITERSVLNLYPMGAAEDLELPDSALNGQIELETSPVCEVQNDLTLESNGSQYSPDEMRENSPTVSPTINSTAPFGLKPRSVFLRPQRNLESIDPQFTIRRKMEQLREEKELVEQLRESIEMRLKVTLHEDLGAALMDGVVLCHLVNHIRPRSVASIHVPSPAVPKLSMAKCRRNVENFLEACRKLGVPEEKLCLPHHILEEKGLVKVGITVQALLDVTVTKTLFT