Sequence details NCBI ID: XM_004844156.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Rcbtb1
Gene Name regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 1, transcript variant X2
Entrez Gene ID 101724518

Database interlinks

Part of NW_004624748.1 (Scaffold)

For more information consult the page for NW_004624748.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

RCBTB1 ENSCPOG00000002199 (Guinea pig)

Gene Details

regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 1

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000001995, Guinea pig)

Protein Percentage 97.74%
CDS Percentage 94.85%
Ka/Ks Ratio 0.06373 (Ka = 0.011, Ks = 0.1723)

RCBTB1 ENSG00000136144 (Human)

Gene Details

regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 1

External Links

Gene Match (Ensembl Protein ID: ENSP00000367552, Human)

Protein Percentage 98.87%
CDS Percentage 93.53%
Ka/Ks Ratio 0.0192 (Ka = 0.0053, Ks = 0.2742)

Rcbtb1 ENSMUSG00000035469 (Mouse)

Gene Details

regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 1

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000022551, Mouse)

Protein Percentage 96.05%
CDS Percentage 90.9%
Ka/Ks Ratio 0.0613 (Ka = 0.0211, Ks = 0.3447)

Rcbtb1 ENSRNOG00000021712 (Rat)

Gene Details

regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 1 (Rcbtb1), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000038352, Rat)

Protein Percentage 95.66%
CDS Percentage 89.56%
Ka/Ks Ratio 0.05376 (Ka = 0.0223, Ks = 0.4156)

Genome Location

Sequence Coding sequence

Length: 1596 bp    Location: 5097982..5146195   Strand: +
Raw sequence   
>XM_004844156.1
ATGGTGGATGTAGGAAAGTGGCCAATCTTTACTCTGCTCTCACCTCAAGAAATTGCGTCTATTAGGAAAGCATGTGTCTTTGGCACCTCAGCCAATGAAGCGCTTTATGTCACTGACAATGATGAGGTCTTTGTGTTTGGACTGAATTATAGTAACTGCCTAGGAACTGGAGATAACCAGAGTACACTTGTACCTAAGAAGCTAGAAGCCTTATGTGGAAAGAAGATTAAAAGCCTTAGTTATGGGAGTGGCCCCCATGTTCTTCTCAGCACTGAAGAAGGAGTTGTCTATGCCTGGGGCCACAATGGATACAGCCAGCTGGGAAATGGAACGACCAACCAAGGCATTGCCCCGATCCAAGTCTGTACCAATCTCTTGATCAAGCAGGTTGTTGAAGTAGCATGTGGCTCACATCATTCAATGGCCCTGGCAGCTGATGGAGAGGTATTTGCTTGGGGTTATAACAACTGTGGCCAGGTGGGATCAGGATCTACAGCAAATCAACCAACTCCTCGAAAGGTTACCAACTGCTTACATATTAAGAGGGTGGTTGGCATTGCCTGCGGTCAGACCTCGTCCATGGCTGTTCTGGACAATGGTGAGGTCTATGGCTGGGGCTACAATGGCAATGGCCAGCTGGGTTTGGGAAACAATGGCAACCAACTAACCCCTGTGAGAGTGGCAGCTTTGCACAGCGTGTGTGTGAATCAGATTGTCTGCGGCTATGCACATACTCTAGCACTAACAGATGAGGGCTTGCTCTATGCCTGGGGAGCTAACACATATGGGCAGCTGGGAACTGGCAATAAAAATAACCTGCTAAGCCCAGCACACATCATGGTGGAGAAAGAAAGGGTGGTAGAGATTGCAGCCTGTCACTCCACCCACACATCTGCTGCCAAGACCCAGGGTGGGCACGTGTACATGTGGGGCCAGTGCCGGGGCCAGTCAGTGATCCTCCCTCACCTCACCCACTTCTCCTGCACCGACGACGTGTTTGCCTGCTTCGCCACTCCTGCTGTCTCATGGCGCCTTTTGTCTGTAGAGCATGAAGACTTTTTAACAGTTGCAGAGTCACTGAAGAAAGAATTTGATAGTCCAGAAACTGCTGATCTGAAGTTTCGAATTGATGGGAAATATGTTCATGTCCATAAAGCTGTTTTGAAAATCAGGTGTGAGCACTTTCGATCCATGTTCCAGTCTTACTGGAATGAGGACATGAAAGAGGTGATAGAAATAGACCAGTTTTCTTACCCTGTGTATCGTGCCTTTCTCCAGTACCTCTACACAGACACAGTGGATCTGCCGCCTGAAGATGCTATAGGTCTTTTGGATTTGGCGACATCTTACTGTGAAAACAGACTGAAAAAACTTTGTCAGCACATTATCAAGCGTGGAATTACTGTGGAGAATGCATTTTCATTATTCTCTGCTGCAGTCAGATATGATGCAGAGGATTTAGAAGAATTCTGCTTTAAGTTTTGCATCAATCATTTGACAGAAGTTACACAGACTGCAGCATTTTGGCAAATGGATGGGCCTCTGCTAAAGGAGTTCATTGCTAAAGCCAGTAAATGTGGAGCCTTTAAGAACTGA

Related Sequences

XP_004844213.1 Protein

Rcbtb1 PREDICTED: RCC1 and BTB domain-containing protein 1 isoform X2 [Heterocephalus glaber]

Length: 531 aa      View alignments
>XP_004844213.1
MVDVGKWPIFTLLSPQEIASIRKACVFGTSANEALYVTDNDEVFVFGLNYSNCLGTGDNQSTLVPKKLEALCGKKIKSLSYGSGPHVLLSTEEGVVYAWGHNGYSQLGNGTTNQGIAPIQVCTNLLIKQVVEVACGSHHSMALAADGEVFAWGYNNCGQVGSGSTANQPTPRKVTNCLHIKRVVGIACGQTSSMAVLDNGEVYGWGYNGNGQLGLGNNGNQLTPVRVAALHSVCVNQIVCGYAHTLALTDEGLLYAWGANTYGQLGTGNKNNLLSPAHIMVEKERVVEIAACHSTHTSAAKTQGGHVYMWGQCRGQSVILPHLTHFSCTDDVFACFATPAVSWRLLSVEHEDFLTVAESLKKEFDSPETADLKFRIDGKYVHVHKAVLKIRCEHFRSMFQSYWNEDMKEVIEIDQFSYPVYRAFLQYLYTDTVDLPPEDAIGLLDLATSYCENRLKKLCQHIIKRGITVENAFSLFSAAVRYDAEDLEEFCFKFCINHLTEVTQTAAFWQMDGPLLKEFIAKASKCGAFKN