Sequence details NCBI ID: XM_004844117.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Thsd1
Gene Name thrombospondin, type I, domain containing 1, transcript variant X2
Entrez Gene ID 101708507

Database interlinks

Part of NW_004624748.1 (Scaffold)

For more information consult the page for NW_004624748.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

THSD1 ENSCPOG00000008316 (Guinea pig)

Gene Details

thrombospondin, type I, domain containing 1

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000007474, Guinea pig)

Protein Percentage 90.08%
CDS Percentage 90.2%
Ka/Ks Ratio 0.20916 (Ka = 0.054, Ks = 0.2582)

THSD1 ENSG00000136114 (Human)

Gene Details

thrombospondin, type I, domain containing 1

External Links

Gene Match (Ensembl Protein ID: ENSP00000258613, Human)

Protein Percentage 86.5%
CDS Percentage 87.05%
Ka/Ks Ratio 0.20105 (Ka = 0.0738, Ks = 0.3672)

Thsd1 ENSMUSG00000031480 (Mouse)

Gene Details

thrombospondin, type I, domain 1

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000067701, Mouse)

Protein Percentage 79.79%
CDS Percentage 80.49%
Ka/Ks Ratio 0.16616 (Ka = 0.1133, Ks = 0.682)

Thsd1 ENSRNOG00000012108 (Rat)

Gene Details

thrombospondin, type I, domain containing 1 (Thsd1), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000016859, Rat)

Protein Percentage 78.87%
CDS Percentage 79.38%
Ka/Ks Ratio 0.16053 (Ka = 0.1217, Ks = 0.758)

Genome Location

Sequence Coding sequence

Length: 2574 bp    Location: 1875121..1845974   Strand: -
Raw sequence   
>XM_004844117.1
ATGAAACCAATGTTGAAGGACTTTTCAAATCTGTTGCTGGTGGTGCTCTGTGACTATGTCCTTGGAGAAGCTGAATATCTTCTTTTGAGAGAGCCCGGCCATGTAGCACTGAGCAACAGCACAGTGTCAGTGGATTTCCAGTATTTTGATAGTGCTAATGGGACACTGAGGAATGTATCTGTCCTGCTGTTGGAGGCCAACACCAATCAGACTGTCATCACCAAGTATCTCCTAACTAATGAGTCCCAGGGAACACTCGAGTTTGAGTGCTTCTACTTCAAAGAGGCAGGTGATTACTGGTTCATCATGACTCCTGAAGTGTCAGACAACAGTACTTTAGTCCCCTGGCTGGAGAAGCGTGTCTTTCTTAAGGTGGAATGGCCTGTCTTTCATGTTGACTTGAATAGGACGTCCCAGGCAGCAGAAGGCACCTTCCAGGTAGGCCTTTTTGCCAGTCAACCTCTATGCCCATTTCCTATGGCCAAGCCCAGCATGTTGGTAGATGTCATCTTCACCAACAGTCTCCCTGAGACAAGAACAAGTCCAGGACAGCCACTGGAAATAAGAACCAGCAAAAGGACAGATCTCATGCAAAGTCAGTGGGTTGAGTTTGGCTGTGCACCTGTGGGGCCAGAAGCCTATGTCACCGTGGTGCTGAAGCTGCTTGGCCAAGACTCGGTCATTACTTCTACAGGACCCATTGACCTGGCCCAGAAATTTGGATACAAGTTGATGATGGTGCCGGAACTCATGTGTGAGTCCAGGGTGGAGGTGATGATCTTGCCTCCACCATGTATCTTTGTCCAAGGAGTAGTTACTGTCTTCAAGGAGGCCCCTAGACGTCCTGGGGAAAGAACAGTTAAGCTTGCTGAAAACAGCTTACCTCTGGGAGAGAGAAGAACAGTATTTAACTGCACTTTGTTTGACGTGGGAAAGAATAAATATTGCTTTAACTTTGGCAATTCAAGAAGAAGCCACTTTTCTGCAAAGGAGAAGGAATGCATGCTAATTCAGAGAACTATAGAAACTTGGGGACTGTGGCAGCCATGGAGCCAGTGTAGCGCCACATGTGGGGATGGTGTCAGAGAGCGTCGCCGAGTGTGTCTCACTTCCTTCCCCTCCAGACCTGGCTGTCCTGGACCGTCCTCGGAGACCTCCTCATGTTCCCTGGAGGAGTGTACTGCTTTCCAGCCATCCAGTCCATCTCCTCTTCCACCAGAGGGTCCAGTGAAGTCCAACAACATTGTGACTGTCACAGGGATATCCCTGTGCTTGTTCATCATTGTGGCCACCGTGCTCATCACACTGTGGAGGAGGTTCGGACGGGCCCCAAAATGCAGCACCCCTGCTCGACACAACTCTATCCATTCCCCTGGCTTCCGGAAGAACTCGGATGAGGAGAACATCTGTGAACTGAGTGAGCAGCGTGGAAGCTTCTCTGATGGGGGTGATGGGCCTGGGGGGAGTCCAGGGGACACTGGCATCCCTCTGACCTACAGGTGCAGTGGGCCAGTGACTCCTGAGGATGATGCCTCTGGCAGTGAGAGCTTTCAGTCTAATGCACAGAAGATTATCCCTCCTCTGTTTAGCTACCGCCTTGCCCAGCAGCAGTTGAAAGAGATGAAGAAGAAAGGTCTGACAGAAACCACTAAAGTATACCACGTGTCTCAGAGTCCCCTGACAGACACTGCCATTGATGCTGCAGCTGGACCCCCCTTAGACTTGGAAAGCACAGAAGAAGCAGCAGCAGCAGCAGCAGCAAACAAGTTCCGGATCAAATCCCCATTTTTGGACCCACCTGTGGTGAGTGCCGAGGAAGGACCTCCCTCCAGGCTGGATTTCAACATGTCTCAGGCCAGCTGTTCTGTCAGCCCCAGCCAGACCCTGATTCGCAAGTCACAGCTGAGGCACATGGCAAGCAGAGGGGGCTCTTCTGAGAGGAGCCATACCAGGAATTCCCACTTCAGGAGAACGGCCAGTTTTCATGAAACCAAACAGGTCCGGCCATTCCGGGAGAGGAGCATGTCCACTCTGACTCCACGGCAAGTCCCTACCTACAGTTCTAGGACACGGACCTGGGACCAGGCAGAGGACAGATTTAGGCCTCCAAGTCGAGGTGCCCACCTGCTTCCTGAAAAACTAGAACATTACCAAGGGGCAGGTGGAACCAGTGGACAATTAAGCCCTATCCCTAAATCCTACACCTTGGGGCAGCCCACAAGGAAACCAGACCTGGCAGATCGTCAGGCAGGGTTAGTGGCAGGAGTTGAGAGAACAGAGCCTCATAGAGCTCGGAGGGGACCATCCCCCAATCACAGGAGTGTCTCAAGGAAGCAGTCTTCCCCGACCTGCCCCAAAGATGGTTACCAGAGGGTCAGTCCACTAAGCCCCTCTCAATTTAGAAAAGACAAATGTCAGAGCTTCCCGGCCCATCCTGAGTTTGCTTTCTATGACAACACATCATTTGGCCTCACTGAGGCTGAGCAGAGGATGCTGGACCTTCCAGGATATTTTGGGTCAAATGAAGAGGATGAAACCACAAGTACACTTAGTGTGGAGAAGCTGGTAATCTAA

Related Sequences

XP_004844174.1 Protein

Thsd1 PREDICTED: thrombospondin type-1 domain-containing protein 1 isoform X2 [Heterocephalus glaber]

Length: 857 aa      View alignments
>XP_004844174.1
MKPMLKDFSNLLLVVLCDYVLGEAEYLLLREPGHVALSNSTVSVDFQYFDSANGTLRNVSVLLLEANTNQTVITKYLLTNESQGTLEFECFYFKEAGDYWFIMTPEVSDNSTLVPWLEKRVFLKVEWPVFHVDLNRTSQAAEGTFQVGLFASQPLCPFPMAKPSMLVDVIFTNSLPETRTSPGQPLEIRTSKRTDLMQSQWVEFGCAPVGPEAYVTVVLKLLGQDSVITSTGPIDLAQKFGYKLMMVPELMCESRVEVMILPPPCIFVQGVVTVFKEAPRRPGERTVKLAENSLPLGERRTVFNCTLFDVGKNKYCFNFGNSRRSHFSAKEKECMLIQRTIETWGLWQPWSQCSATCGDGVRERRRVCLTSFPSRPGCPGPSSETSSCSLEECTAFQPSSPSPLPPEGPVKSNNIVTVTGISLCLFIIVATVLITLWRRFGRAPKCSTPARHNSIHSPGFRKNSDEENICELSEQRGSFSDGGDGPGGSPGDTGIPLTYRCSGPVTPEDDASGSESFQSNAQKIIPPLFSYRLAQQQLKEMKKKGLTETTKVYHVSQSPLTDTAIDAAAGPPLDLESTEEAAAAAAANKFRIKSPFLDPPVVSAEEGPPSRLDFNMSQASCSVSPSQTLIRKSQLRHMASRGGSSERSHTRNSHFRRTASFHETKQVRPFRERSMSTLTPRQVPTYSSRTRTWDQAEDRFRPPSRGAHLLPEKLEHYQGAGGTSGQLSPIPKSYTLGQPTRKPDLADRQAGLVAGVERTEPHRARRGPSPNHRSVSRKQSSPTCPKDGYQRVSPLSPSQFRKDKCQSFPAHPEFAFYDNTSFGLTEAEQRMLDLPGYFGSNEEDETTSTLSVEKLVI