Details from NCBI annotation

Gene Symbol Scarb1
Gene Name scavenger receptor class B, member 1, transcript variant X2
Entrez Gene ID 101703927

Database interlinks

Part of NW_004624747.1 (Scaffold)

For more information consult the page for NW_004624747.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

SCARB1 ENSCPOG00000023676 (Guinea pig)

Gene Details

scavenger receptor class B, member 1

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000017718, Guinea pig)

Protein Percentage 81.73%
CDS Percentage 87.23%
Ka/Ks Ratio 0.13351 (Ka = 0.0907, Ks = 0.6794)

SCARB1 ENSG00000073060 (Human)

Gene Details

scavenger receptor class B, member 1

External Links

Gene Match (Ensembl Protein ID: ENSP00000261693, Human)

Protein Percentage 78.78%
CDS Percentage 81.53%
Ka/Ks Ratio 0.07851 (Ka = 0.1105, Ks = 1.4074)

Scarb1 ENSMUSG00000037936 (Mouse)

Gene Details

scavenger receptor class B, member 1

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000083242, Mouse)

Protein Percentage 76.82%
CDS Percentage 78.91%
Ka/Ks Ratio 0.08644 (Ka = 0.1276, Ks = 1.4757)

Scarb1 ENSRNOG00000000981 (Rat)

Gene Details

scavenger receptor class B, member 1 (Scarb1), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000060874, Rat)

Protein Percentage 75.44%
CDS Percentage 77.93%
Ka/Ks Ratio 0.07791 (Ka = 0.1333, Ks = 1.7104)

Genome Location

Sequence Coding sequence

Length: 1530 bp    Location: 24010608..23971146   Strand: -
>XM_004843974.1
ATGGGCGGCCGGTCCCGAGCGCGCTGGGCGGCCGCGGCGCTGGGCATCACCGGGCTGCTGTGCGCGGCGCTGGGCGCCGTGATGATCGTCGTGCTGCCCTCTTTCATCCGGCAGCAGGTCGCCAAGAACGTGCGCATCAGCCCAAGCAGTCTGTCCTTCAACATGTGGAAGGAGATCCCAGTGCCCTTCTACATGTCCGTCTACTTCTTCGACGTGGTCAACCCTGATGAGGTCCTGCAGGGCGGGAGGCCGGAGGTGCGCGAGCGCGGGCCCTATGTGTACAGGCAGTTCAGGCAAAAAAGGAACATCTCCTTCCACGACAACGACACGGTGTCCTTCCGGGAGCACTGCACCTTCCAGTTCCAGCCTGAGCGGTCCCGCGGCTCAGAGAGCGACTACATCGTGCTGCCCAACATCCTGCTCATGGCCGCCTCGGCCATGATGGAGCACCAGCCCGCGAGCCTGAAGCTGATCATGACGCTGGCCTTCAGCACCCTGGGCCAGCGTGCCTTCATGAACCGAACCGTGGGCCAGGTCATGTGGGGCTATGAGGACCCGCTGGTGCACCTCATCAGCAAGTACCTCCCACAGATGTTCCCCATCAAGGGCAAGTTCGGGCTGTTCCTGGAGATGAACAACTCGGACTCCGGGCTCTTCACAGTGTTCACGGGGGTGAAGAACCTCAGCCGGATCCACCTGGTGGACAAGTGGAACGGGCTCGGCAAGGTCAACTTCTGGCACTCAGACCAGTGCAACATGATCAACGGGACCTCCGGGCAGATGTGGCCGCCGTTCATGACCCCAGAGTCCTCGCTGCAGTTCTACAGCCCCGAGGCCTGCAGGTCCATGCGGCTTGTCTACCGGGAGCAGGGCGTGTTCCAGGGCATTCCCACCTACCGCTTCTCGGCCCCCAGCACCCTGTTCGCCAATGGCTCCGTCTACCCACCCAACGAGGGCTTCTGCCCGTGCCTGGAGTCGGGCATCCAGAACATCAGCAGCTGCAGGTTCGGTGCGCCCCTCTTCCTCTCCCACCCACACTTCTACAACGCTGACCCGGTCCTGGTGGAGAGGGTGCTTGGCCTGCACCCCAACGCAGAGGAGCACGCCCTCTTCCTGGACATCCACCCGGTCACCGGGATCCCCATGAACTGCTCCGTGAAGCTGCAGCTCAGCCTCTACATCAAAGCCATCAAGGGCATCGGGCAAACCGGGAAGATCGAGCCGGTGGTCCTGCCGCTGCTGTGGTTTGGGCAGAGCGGGACCATGGAGGGTAAGCCGCTCAGCACGTTCTACACGCAGCTGGTGCTGCTCCCCAACATCCTCCACTACGTACAGTACGTGCTGCTGGCGCTGGGCAGCGCGCTGCTGCTCATCCTGGTCGTCTGTCAGGTCCGCAGCCAGGAGAAGTGCTATTTATTTTGGAGTGGTAGTAAAAAGGGCTCAGACGCTAAGGAGGCCATGCAGGCCTACTCTGAATCCCTGATGACTTCCGCTCCCAAGGGCGCTGTGCTGCAGGAGGCCCGGCTATAG

Related Sequences

XP_004844031.1 Protein

Scarb1 PREDICTED: scavenger receptor class B member 1 isoform X2 [Heterocephalus glaber]

Length: 509 aa      View alignments
>XP_004844031.1
MGGRSRARWAAAALGITGLLCAALGAVMIVVLPSFIRQQVAKNVRISPSSLSFNMWKEIPVPFYMSVYFFDVVNPDEVLQGGRPEVRERGPYVYRQFRQKRNISFHDNDTVSFREHCTFQFQPERSRGSESDYIVLPNILLMAASAMMEHQPASLKLIMTLAFSTLGQRAFMNRTVGQVMWGYEDPLVHLISKYLPQMFPIKGKFGLFLEMNNSDSGLFTVFTGVKNLSRIHLVDKWNGLGKVNFWHSDQCNMINGTSGQMWPPFMTPESSLQFYSPEACRSMRLVYREQGVFQGIPTYRFSAPSTLFANGSVYPPNEGFCPCLESGIQNISSCRFGAPLFLSHPHFYNADPVLVERVLGLHPNAEEHALFLDIHPVTGIPMNCSVKLQLSLYIKAIKGIGQTGKIEPVVLPLLWFGQSGTMEGKPLSTFYTQLVLLPNILHYVQYVLLALGSALLLILVVCQVRSQEKCYLFWSGSKKGSDAKEAMQAYSESLMTSAPKGAVLQEARL