Sequence details NCBI ID: XM_004843870.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Setd1b
Gene Name SET domain containing 1B, transcript variant X4
Entrez Gene ID 101702850

Database interlinks

Part of NW_004624747.1 (Scaffold)

For more information consult the page for NW_004624747.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

SETD1B ENSCPOG00000000990 (Guinea pig)

Gene Details

SET domain containing 1B

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000000889, Guinea pig)

Protein Percentage 88.83%
CDS Percentage 87.27%
Ka/Ks Ratio 0.11303 (Ka = 0.0627, Ks = 0.5543)

SETD1B ENSG00000139718 (Human)

Gene Details

SET domain containing 1B

External Links

Gene Match (Ensembl Protein ID: ENSP00000267197, Human)

Protein Percentage 90.22%
CDS Percentage 86.96%
Ka/Ks Ratio 0.06953 (Ka = 0.0493, Ks = 0.7094)

Setd1b ENSMUSG00000038384 (Mouse)

Gene Details

SET domain containing 1B

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000133933, Mouse)

Protein Percentage 89.14%
CDS Percentage 83.55%
Ka/Ks Ratio 0.06427 (Ka = 0.0618, Ks = 0.9611)

Setd1b ENSRNOG00000001337 (Rat)

Gene Details

SET domain containing 1B

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000001807, Rat)

Protein Percentage 84.37%
CDS Percentage 80.27%
Ka/Ks Ratio 0.09255 (Ka = 0.0981, Ks = 1.0599)

Genome Location

Sequence Coding sequence

Length: 5523 bp    Location: 22184443..22205484   Strand: +
Raw sequence   
>XM_004843870.1
ATGTCCAGCAACCGGCCGGTGGAAATTGTGGAAGATCCCCGGGTCGTCGGGATCTGGACCAAAAACAAGGAGCTGGAGCTCTCGGTGCCCAAATTCAAGATCGATGAATTCTACGTGGGCCCGGTGCCTCCAAAGCAGGTGACATTTGCCAAGCTGAATGATAACATCCGAGAAAACTTCCTGCGGGACATGTGCAAGAAGTATGGGGAGGTGGAGGAGGTGGAGATTTTGTACAACCCCAAGACCAAGAAGCACCTGGGCATTGCCAAGGTGGTGTTTGCCACGGTCAGGGGTGCCAAGGAGGCTGTCCAGCACTTGCACTGCACGTCGGTCATGGGCAACATCATTCACGTGGAGCTGGACACCAAAGGGGAAACTCGTATGCGCTTCTATGAACTGCTGGTCACCGGCCGATACACCCCTCAGACCCTCCCGGTGGGCGAGTTGGATGCCATCTCTCCACTCGTGAATGAGACCCTGCAGCTGTCGGACGCCCTGAAGCGCCTCAAGGATGGCAGCCTGTCTGCAGGCTGTGGCTCTGGTTCCTCCTCAGTCACTCCCAACAGCAGTGGGACACCCTTCTCCCAGGACACAGCTTATTCCAGCTGCCGCCTGGACACACCCAACTCCTACGGACAGGGTACCCCGCTCACCCCGCTCACACCGCGCCTGGGTACCCCCTTCTCGCAAGATTCCAGCTACTCCAGCCGCCAGCCCACCCCCTCCTACCTCTTCAGCCAGGACCCCACCGCCACCTTCAAGGCTCGCCGCCACGAGAGCAAGTTTACAGACGCCTACAACCGCCGCCACGAGCACCATTACGTCCACAACTCTGCAGTGGCCGGGGGCGCAGCCACCTTCCGGGGCTCCTCGGACCTTCCGTTCGGGACCATGGGCAGCACCGGGAGCAGCAGCGCCCCTCCATTCAAGGTCCAGCCGCAGGACTCAGCCACCTTTGCGCACACTCCACCCCCCGCCCAGGCGGCCCCTGGCCCTGGCTTCAAGTCAGCCTTCTCCCCGTACCAGACCCCGGTGCCCCCGTTCCCGCCTCCCCCAGAGGAGCCTGCGCCCACCACAGCCTTCGGGGCCCGGGACAGTGGGGACTTTCGAAGGGCACCCGCACCCCCGCCGCTGCCTCCTGCCGAGCCTCTGGCCAAGGAGAAGCCGGGCACCCCCCCCGGGCCACCGCCCCCCGACAACAACAGCATGGAGCTGGGGGGCCAGCCGACCTTCGGCTGGAGTCCCGAGCCCTGTGACAGCCCTGGGACCCCCACGCTGGAGTCGTCGCCCGCGGGCCCCGAGAAGCCCCATGACAGCCTGGACTCGCGAATCGAGATGCTCTTGAAGGAACAGCGCACCAAGCTGCCCTTCCTGCGGGAGCAGGACTCGGACCCCGAGCTGCAGATGGAGGGCAGCCCCATCTCCTCCTCCTCCTCCCAGCTCTCCCCGCTTGCCCCCTTCGGCGCCAACTCCCAGCCTGGCTTCCGCGGCCCCTCGCCACCCACCTCGCCGCCCTCCAGCACGGGCCTGGAAGACATCAGCCCGACACCACTGCCGGACTCTGACGAGGATGATGAGCTGGGCCTGGGCCTGGGGCCTCGACCCCCACCTGAGCCGGGACCCCCGGACCCTTCCGCTCTTCTGGGCCAAATGCCTGAGGTGGCCTTGGACCTGGCTGGAGACAGGACCCCAACTTCAGAGAAGATGGATGAGGGCCAGCAGTCCTCGGGTGAGGACATGGAGATCTCGGACGATGAGATGCCCTCAGCCCCCATCACCAGCGCCGACTGCCCCAAGCCCATGGTGGTGGCCCCTGGGGCAGCGGCCGTGGCAGCCCCCAACGTGCTGGCCCCAAGCCTGCCGCTGCCACCGCCCCCGGGCTTCCCGCCGCTGCCCCCGCCCCCGCCGCAGCCTGGCTTCCCCTTGCCGCCCCCCCTGCCCCCCCCGCCCCTGCCGGCACCGCCACCCGGTGTCCCTCCCCCGCCCATCCTGCCGCCGCTGCCACCCTTCCCGCCTGGACTGTTCCCCGTGATGCAGGTGGATGTGAGCCACGTGCTGGGCGGCCAGTGGGGCGGGATGCCCATGTCCTTCCAGATGCAGACGCAGATGCTCAGCCGGCTGATGACCGGCCAGGGTGCCTGTCCCTATCCGCCCTTCATGGCCGCTGCGGCCGCTGCCGCCTCCGCCGGGCTGCAGTTCGTCAACCTGCCACCCTACCGCGGCCCCTTCTCCCTGGGCAACAGTGGCCCTGGCCGCGGGCAGCACTGGCCACCCCTGCCCAAGTTCGACCCCTCAGTGCCACCCCCTGGCTATGTGCCGCGCCAGGAGGACCCGCACAAGGCCACGGTGGACGGCGTCCTGCTGGTGGTGCTCAAGGAGCTGAAGGCCATCATGAAGCGAGACCTGAACCGCAAGATGGTGGAGGTGGTGGCCTTCCGGGCCTTCGATGAGTGGTGGGACAAGAAGGAGCGGATGGCCAAGGCCTCGCTGACCCCCGTGAAATCGGGCGAGCACAAGGACGAGGACAGGCCGAAGCCCAAAGACCGAATTGCCTCATGTCTGCTGGAGTCGTGGGGCAAGGGCGAGGGCCTGGGCTATGAGGGCCTGGGCCTGGGCATCGGGCTGCGCGGTGCCATCCGCCTGCCCTCCTTCAAGGTCAAGCGGAAGGAGCCACCGGACGCAGCCACGTCCGGCGACCAGAAGCGGCTGCGGCCCTCGACCTCAGTGGATGAGGACGATGAAGAGTCCGAGCGGGAGCGCGACCGCGACACGGCCGACGTCCCCTGTGAGCTGGCCAAGCGGGACCCCAAGGCCGTGGGTGTGCGGCGACGGCCGGCTCGGCCCCTGGAGCTGGACAGTGGCGGGGAGGAGGACGAGAAGGAGTCCTCGTCGGAGGGGCGGGAGAGCACGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGATGACGGTGAAGACAGCGATGAGCAGGAAGAGTCTGAGAACGACGAGGAAGGCGACACTGCACTGTCAGAGGCGAGTGAGAAGGACGAGGGGGACTCGGATGCAGAGGAGACAGTAAGCACCGTCACGTCCAAGGCCGATGCCGAGTCATCCAGCGAGAGTTCCGAGTCTTCAGAGTTTGGGTCCAGCTCTGAGTCCTCCTCTGAGTCCTCAGAGGATGAGCAGGAGATGGCAGCGGAGGAAGAGGAGGAGGAGGAGGAAGAGGAGGTGGTGGCAGCAGTGGCAGCAGTGGCAGAGGAGATCACGCCTCCTGCAGGTGCTGAGGACGCTGAGCCCAGCAGGGAGGAGGCCACACTGGCCCCAGGCGGACCTGGCACAAAGTCGCTGGTCACAGAAGAAGAGGGGGACCTTGAGGCTGAGTTCACAGCCCCGGGGGAGCGGACCCCCATCCAGGAGGAACCCCCTGTGCCTGTGGCTGCTGAGGAGCTAGTGGGGCCTAAGGAGCCCCCTGAAGAGCCAGGCCCAAACCAGGAAGCAAACATGTTGATCTCACCAGAGCCCCCTTCCAACGAGGCAGAGGTGCCGCTTCCCACATCCCCGGAACGAGTTCCAGGGCAAGACCTGGGAGCGGAGCCCGAGCCCCCGTCAGTGCCGTCCCTGCCCCCACAGCCGCCCTTGCCGCCCCCCCAGCCGCCCCGGCCCCCCAGCCCTCCCCCAGAACCGGAGCTCCCGGAGCCCCCGCCCGAGGACCCACCCCCCCGGACTCCAGGCCTCTGTGGCAGCCTAGGCAAGTCACAGAGCACAGAGACGATGCCGGCCACCCCCAGTGGGGAGCCCCCGCTCTCGGGGGGCAGCAGCAACCTGTCCCTGAGCTCCCCGCAGGTGCCCGGCAGCCCCTTCTCCTACCCATCCCAGTCCCCCAGCTTGGGCAGCGGAGGACTACCCCGGACACCTGGCAGGGACTTCAGCTTCACGCCCACCTTCCCCGAGCCCAGCGGGCCTCTGCTGCTCCCCGTCTGTACCCTACCCGCTGGGCGGCGTGAGGAGCGCCCCCTGGCCTCCCCGGTGCTCCTGGACACGGGCCTGCCGCTGCCCCTGCCCCTGCCCCTGCCGCTGCCCCTGGCACTGCCCGTCCCTGTCCTGAGGGCCCAGGCTCGGGCCCCTGGGCAGCTGCCTCCCCTGCTTCCGGCCCCTCTGGCCCCCTGCCCACCCCCCATCAAGAGGAAGCCAGGCCGGCCCCGGCGGTCCCCACCGTCGATGCTGTCCCTGGATGGGTCCCTGGTCCGGCCACCCACAGGGGTACCCCTTGGGAGGGAGCTCCTGCTCCTGCCAAGCCAGCCGCAGACCCCCATCTTCCCCAGCGCCCACGATCCCCGGGCGGTGACCCTGGACTTTCGGAACGCGGGGATCCCAGCCCCCCCGCCCCTGCCCCCCCAGCCACCGCCTCCCCCGCCTCCACCGCCCACTGAGCCTGCCAAGCTGCCCTTCAAGGAGCTGGACAACCAGTGGCCCTCCGAGGCCATCCCTCCAGGCCTCCGTGGGCGCGACGAAGTCACCGAGGAGTACATGGAGCTAGCCAAGGCACGGGGCCCATGGCGCCGGCCCCCGAAGAAGCGGCACGAGGACCTAGTGGCCCCCTCGGCCTCCCCTGAGCTCTCGCCATCCCAGCCCCTGTTCCGGCCCCGCTCGGAGTTTGAGGAGATGACCATCCTGTACGACATCTGGAACGGTGGCATTGACGAGGAGGACATCCGCTTCCTGTGTGTCACCTATGAGCGGCTGCTGCAGCAGGACAATGGCATGGACTGGCTCAACGACACGCTCTGGGTCTACCACCCCTCCACCAGCCTCTCTTCTGCTAAGAAAAAGAAACGGGACGATGGCATCCGGGAGCATGTGACGGGCTGTGCCCGCAGTGAGGGCTTCTACACCATCGACAAGAAGGACAAGCTCAGATACCTCAACAGCAGCCGCGCCAGCACCGATGAGCCTCCTGCGGACACCCAGGGCATGAGCATCCCTGCACAGCCCCACGCCTCCACCCGGGCCGGCTCTGAGCGCCGTTCGGAGCAGCGCCGCCTGCTGTCCTCCTTCACTGGCAGCTGTGACAGCGACCTGCTCAAGTTTAACCAGCTCAAGTTCCGGAAGAAAAAGCTTAAATTCTGCAAGAGCCACATTCACGACTGGGGCCTGTTTGCCATGGAGCCCATCGCGGCTGACGAGATGGTTATTGAGTACGTGGGCCAGAACATCCGTCAGGTGATCGCAGACATGCGGGAGAAACGGTATGAGGACGAGGGCATCGGTAGCAGCTACATGTTCCGGGTCGACCACGACACCATCATCGATGCCACCAAGTGCGGCAACTTCGCACGCTTCATTAACCACAGCTGCAACCCCAACTGCTACGCCAAGGTGATCACAGTGGAGTCCCAGAAGAAAATTGTCATCTACTCCAAGCAGCACATCAACGTCAATGAGGAGATCACCTACGACTACAAGTTCCCAATCGAGGATGTGAAGATCCCCTGCCTCTGCGGCTCCGAGAACTGCCGGGGGACCCTCAACTAG

Related Sequences

XP_004843927.1 Protein

Setd1b PREDICTED: histone-lysine N-methyltransferase SETD1B isoform X4 [Heterocephalus glaber]

Length: 1840 aa      View alignments
>XP_004843927.1
MSSNRPVEIVEDPRVVGIWTKNKELELSVPKFKIDEFYVGPVPPKQVTFAKLNDNIRENFLRDMCKKYGEVEEVEILYNPKTKKHLGIAKVVFATVRGAKEAVQHLHCTSVMGNIIHVELDTKGETRMRFYELLVTGRYTPQTLPVGELDAISPLVNETLQLSDALKRLKDGSLSAGCGSGSSSVTPNSSGTPFSQDTAYSSCRLDTPNSYGQGTPLTPLTPRLGTPFSQDSSYSSRQPTPSYLFSQDPTATFKARRHESKFTDAYNRRHEHHYVHNSAVAGGAATFRGSSDLPFGTMGSTGSSSAPPFKVQPQDSATFAHTPPPAQAAPGPGFKSAFSPYQTPVPPFPPPPEEPAPTTAFGARDSGDFRRAPAPPPLPPAEPLAKEKPGTPPGPPPPDNNSMELGGQPTFGWSPEPCDSPGTPTLESSPAGPEKPHDSLDSRIEMLLKEQRTKLPFLREQDSDPELQMEGSPISSSSSQLSPLAPFGANSQPGFRGPSPPTSPPSSTGLEDISPTPLPDSDEDDELGLGLGPRPPPEPGPPDPSALLGQMPEVALDLAGDRTPTSEKMDEGQQSSGEDMEISDDEMPSAPITSADCPKPMVVAPGAAAVAAPNVLAPSLPLPPPPGFPPLPPPPPQPGFPLPPPLPPPPLPAPPPGVPPPPILPPLPPFPPGLFPVMQVDVSHVLGGQWGGMPMSFQMQTQMLSRLMTGQGACPYPPFMAAAAAAASAGLQFVNLPPYRGPFSLGNSGPGRGQHWPPLPKFDPSVPPPGYVPRQEDPHKATVDGVLLVVLKELKAIMKRDLNRKMVEVVAFRAFDEWWDKKERMAKASLTPVKSGEHKDEDRPKPKDRIASCLLESWGKGEGLGYEGLGLGIGLRGAIRLPSFKVKRKEPPDAATSGDQKRLRPSTSVDEDDEESERERDRDTADVPCELAKRDPKAVGVRRRPARPLELDSGGEEDEKESSSEGRESTEEEEEEEEEEEEEEDDGEDSDEQEESENDEEGDTALSEASEKDEGDSDAEETVSTVTSKADAESSSESSESSEFGSSSESSSESSEDEQEMAAEEEEEEEEEEVVAAVAAVAEEITPPAGAEDAEPSREEATLAPGGPGTKSLVTEEEGDLEAEFTAPGERTPIQEEPPVPVAAEELVGPKEPPEEPGPNQEANMLISPEPPSNEAEVPLPTSPERVPGQDLGAEPEPPSVPSLPPQPPLPPPQPPRPPSPPPEPELPEPPPEDPPPRTPGLCGSLGKSQSTETMPATPSGEPPLSGGSSNLSLSSPQVPGSPFSYPSQSPSLGSGGLPRTPGRDFSFTPTFPEPSGPLLLPVCTLPAGRREERPLASPVLLDTGLPLPLPLPLPLPLALPVPVLRAQARAPGQLPPLLPAPLAPCPPPIKRKPGRPRRSPPSMLSLDGSLVRPPTGVPLGRELLLLPSQPQTPIFPSAHDPRAVTLDFRNAGIPAPPPLPPQPPPPPPPPPTEPAKLPFKELDNQWPSEAIPPGLRGRDEVTEEYMELAKARGPWRRPPKKRHEDLVAPSASPELSPSQPLFRPRSEFEEMTILYDIWNGGIDEEDIRFLCVTYERLLQQDNGMDWLNDTLWVYHPSTSLSSAKKKKRDDGIREHVTGCARSEGFYTIDKKDKLRYLNSSRASTDEPPADTQGMSIPAQPHASTRAGSERRSEQRRLLSSFTGSCDSDLLKFNQLKFRKKKLKFCKSHIHDWGLFAMEPIAADEMVIEYVGQNIRQVIADMREKRYEDEGIGSSYMFRVDHDTIIDATKCGNFARFINHSCNPNCYAKVITVESQKKIVIYSKQHINVNEEITYDYKFPIEDVKIPCLCGSENCRGTLN