Details from NCBI annotation

Gene Symbol Trafd1
Gene Name TRAF-type zinc finger domain containing 1
Entrez Gene ID 101702625

Database interlinks

Part of NW_004624747.1 (Scaffold)

For more information consult the page for NW_004624747.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

TRAFD1 ENSCPOG00000010871 (Guinea pig)

Gene Details

TRAF-type zinc finger domain containing 1

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000015225, Guinea pig)

Protein Percentage 78.32%
CDS Percentage 84.09%
Ka/Ks Ratio 0.39979 (Ka = 0.1352, Ks = 0.3381)

TRAFD1 ENSG00000135148 (Human)

Gene Details

TRAF-type zinc finger domain containing 1

External Links

Gene Match (Ensembl Protein ID: ENSP00000257604, Human)

Protein Percentage 81.83%
CDS Percentage 87.14%
Ka/Ks Ratio 0.3594 (Ka = 0.1003, Ks = 0.2791)

Trafd1 ENSMUSG00000042726 (Mouse)

Gene Details

TRAF type zinc finger domain containing 1

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000047475, Mouse)

Protein Percentage 75.0%
CDS Percentage 80.09%
Ka/Ks Ratio 0.21757 (Ka = 0.1406, Ks = 0.6463)

Trafd1 ENSRNOG00000001351 (Rat)

Gene Details

TRAF type zinc finger domain containing 1 (Trafd1), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000036651, Rat)

Protein Percentage 75.52%
CDS Percentage 80.73%
Ka/Ks Ratio 0.24564 (Ka = 0.1414, Ks = 0.5756)

Genome Location

Sequence Coding sequence

Length: 1740 bp    Location: 20057102..20034851   Strand: -
>XM_004843767.1
ATGGCTGAATTTCTAGATGACCAGGATACACGACTGTGTGACAACTGCAAAAAAGAAATTCCGGTGTGTAACTTTACCATCCATGAGATCCATTGTCAAAGGAACATTGGTATATGTCCTATCTGCAAGGAACCATTTCCCAAATCAGAGATGGAGATTCACACAGCTACAGAACACTGTCAGGTGACTTGCAAATGTAACAAGAAGTTTGAGAAGATGCAGTTAAAGAAGCATGAGGAGACTGAGTGTCCTCTGCGGCTTGCTCTCTGCCAGCACTGTGATTTGGAACTTTCTGTTCTCAAACTGAAGGAACATGAAGATTATTGTGGTGCCCGCACAGAGCTGTGTAGCAACTGTGGGCGCAATGTCCTTGTGAAGGATCTAAAGACTCACCCTGAAGTTTGTGGTAGAGGGGAGGAGGAAAAGAGGAATGAAGGTGCCATACTTCCTAATGCATATGATGAGTCTTGGGGTCAAGATGGAATTTGGATTGCATCCCAGCTCCTCAGACAAATTGAAGCTCTGGACCCACCCACAAGGCTGCCCCGAAGGCCCCTGAGAGACTTTGAATCAGACCTTTTCCACAATAGGACTACCAGCCAAAGGAACATTGCAGCCCATTTTCCAGTTCAGAATAATCTGTTTGAAGAACAAGAAAGGCAGGAAAGGAGCAGAGGCCGAAAGCCCCCCTCAGAGGGTGGCGAAGATACTGCAAACTTGGACTTCATGCTGGCCCTAAGTCTGCAGAATGAGGGCCAGGCCTCCAGTGTGGCAGAACAGCAGGACTTCTGGAGGGCTGTGCGTGAGGCAGAGCAGTCTCACGGTGGCCCCAGTTCTCTGAGTGACATAAAGGGTACAGCTGATGAGACCATGTTGCCTTGTGAGTTTTGTGAGGAACTCTACCCAGAGGAACTGCTGATTGACCATCAGACAAGCTGTAACCCTTCACGTGCCTTACCATTGCTCAGTACTCCCCTGAGGCGGGTGGAGGATCCTGATGTCATCTTCCAGAGCTTTCTGGAGCGGGCTACAAGTAATCAGTTGGACTCTTTGATGGGCCTGAGTGACTCACCCCCTGTGGAAGACAGTGTCATCATCCCATGTGAATTCTGTGGGGTGCAGCTGGAAGAAGAGGTGCTATTCCATCATCAGGACCAGTGTGACCAACGTCCAGCCACAGCCAACCACATGATGGGGGAGATTCCTCGACAGGATTCCCAGCCTCACGAGACCTCCCCAGAGCTGCCCAGGAGGCGTGTCAGACACCAGGGAGACCTGTCTTCTGATTACATGGATGCTATCAAGCAGGAAGCAGCTAAAGGACCTACCTACCCTCTGCCCCCCAGCAGACCCATTAATAATATGACAACCAGCTGTAACCGACTGTCAAAATCCACCTCTGCCCCCAGACCTGGGTACCAGCCCAGCCCTCCTCATGTGCTGAAGCTCAACAACTCAGACAGCCAGGATATCCGGGGGCAGAACCTAAGCAGCCGGAATGGGGCCCTGGCTGCTGGGTCTTCTCCAGTGATTGACTCTGTGCGCAGCCTGTATCCGGAAAACCTCATGCCCTCTTTCCCCCGGGGACCTGCAGGGAGATACGGAGCTAGTGGTAGGAGCGAAGGTGCCAGGAGCTCCCGAGCCACCCCTGCAGCCACTGACTACCACAGCAGAACTGCAAAGGCCAAGCCCCCGAAGCAGCAGGGAGCTGGGGATGCAGAGGAGGAAGAGGAGGAGTAA

Related Sequences

XP_004843824.1 Protein

Trafd1 PREDICTED: TRAF-type zinc finger domain-containing protein 1 [Heterocephalus glaber]

Length: 579 aa      View alignments
>XP_004843824.1
MAEFLDDQDTRLCDNCKKEIPVCNFTIHEIHCQRNIGICPICKEPFPKSEMEIHTATEHCQVTCKCNKKFEKMQLKKHEETECPLRLALCQHCDLELSVLKLKEHEDYCGARTELCSNCGRNVLVKDLKTHPEVCGRGEEEKRNEGAILPNAYDESWGQDGIWIASQLLRQIEALDPPTRLPRRPLRDFESDLFHNRTTSQRNIAAHFPVQNNLFEEQERQERSRGRKPPSEGGEDTANLDFMLALSLQNEGQASSVAEQQDFWRAVREAEQSHGGPSSLSDIKGTADETMLPCEFCEELYPEELLIDHQTSCNPSRALPLLSTPLRRVEDPDVIFQSFLERATSNQLDSLMGLSDSPPVEDSVIIPCEFCGVQLEEEVLFHHQDQCDQRPATANHMMGEIPRQDSQPHETSPELPRRRVRHQGDLSSDYMDAIKQEAAKGPTYPLPPSRPINNMTTSCNRLSKSTSAPRPGYQPSPPHVLKLNNSDSQDIRGQNLSSRNGALAAGSSPVIDSVRSLYPENLMPSFPRGPAGRYGASGRSEGARSSRATPAATDYHSRTAKAKPPKQQGAGDAEEEEEE